View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_high_28 (Length: 402)
Name: NF1166_high_28
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 28 - 283
Target Start/End: Original strand, 46909223 - 46909476
Alignment:
| Q |
28 |
agttaagagagggtcatcttctaatgaatttcaacttcttggcaaggattgtgtgtttcattaatctgcttcaggattcataattgttaccactcatagg |
127 |
Q |
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| T |
46909223 |
agttaagagagggtcatcttctaatgaatttcaacttcttggtaaggattgtgtgtttcattaatctgcttcaggattcataattgttaccactcat--- |
46909319 |
T |
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| Q |
128 |
aggagtgaataagacatcgcttttggtggccagtttgtcaatttaaataatac-nnnnnnnnngacaaaattttaaataattcttattacttcattgaat |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46909320 |
aggagtgaataagacatcgcttttggtggccagtttgtcaatttaaataatacttttttttttgacaaaattttaaataattcttattacttcattgaat |
46909419 |
T |
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| Q |
227 |
gaatggaaaagtgaatatacatatacaagagtgaagaggtggataacgaccctaact |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46909420 |
gaatggaaaagtgaatatacatatacaagagtgaagaggtggataaccaccctaact |
46909476 |
T |
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