View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_high_3 (Length: 736)

Name: NF1166_high_3
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_high_3
NF1166_high_3
[»] chr6 (3 HSPs)
chr6 (251-634)||(31574276-31574659)
chr6 (91-139)||(31574795-31574843)
chr6 (33-72)||(31574918-31574957)
[»] chr3 (3 HSPs)
chr3 (254-709)||(6509016-6509451)
chr3 (91-139)||(6509597-6509645)
chr3 (33-72)||(6509720-6509759)
[»] chr4 (5 HSPs)
chr4 (293-339)||(38028852-38028898)
chr4 (91-139)||(38029133-38029181)
chr4 (33-72)||(581334-581373)
chr4 (33-72)||(581641-581680)
chr4 (254-287)||(38028963-38028996)
[»] chr8 (1 HSPs)
chr8 (670-709)||(44969389-44969428)
[»] chr5 (1 HSPs)
chr5 (670-709)||(35331158-35331197)


Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 251 - 634
Target Start/End: Complemental strand, 31574659 - 31574276
Alignment:
Q  251 gagtgttgagttcatgcctgtttgcattgtggtcgttgagggcaaatactttgttttgaacatggttagataaagatgagaaaaacagatgacatgaatc 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31574659 gagtgttgagttcatgcctgtttgcattgtggtcgttgagggcaaatgctttgttttgaacatggttagataaagatgagaaaaacagaagacatgaatc 31574560  T
Q  351 ttagtgatttgctgcttgctatggcatcaatttcagatcaataagttaccgcggagtcaacggttccaaatgcataacattacagatttttgttccttct 450  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||    
T  31574559 ttagtgattggctgcttgctatggcatcaatttgagatcaaaaagttaccgcggaggcaacggttccaaatgcacaacattacggatttttgtcccttct 31574460  T
Q  451 attgtgctgctttctccattatacacaaacttcannnnnnnnncttcaattgtgttataagcttatcctcatttttcttcttcattattttacagggaga 550  Q
    |||||||| |||||||||||||||||||||||||         |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  31574459 attgtgcttctttctccattatacacaaacttcattttttttccttcaattgtgttataggcttatcctcatttttctacttcattattttacagggaga 31574360  T
Q  551 aacatgcggtggaggagtcccatagacaattaacgtatttttcaattaatctgaaagagattttggcctactacaacattaaaa 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  31574359 aacatgcggtggaggagtcccatagacaattaacgtatttttcaattaatctggaagagatttttgcctactacaacattaaaa 31574276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 31574843 - 31574795
Alignment:
Q  91 caactttgtctaaatgaatcaaccactataataacttggctcttgaaaa 139  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  31574843 caactttgtctaaacaaatcaaccactataatcacttggctcttgaaaa 31574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 31574957 - 31574918
Alignment:
Q  33 agaacaacaacggaaaaagattaaacatgagaaacttgaa 72  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  31574957 agaacaacaacggaaaaagatgaaacatgagaaacttgaa 31574918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 254 - 709
Target Start/End: Complemental strand, 6509451 - 6509016
Alignment:
Q  254 tgttgagttcatgcctgtttgcattgtggtcgttgagggcaaatactttgttttgaacatggttagataaagatgagaaaaacagatgacatgaatctta 353  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||                 |||||||||| |||||||||||||    
T  6509451 tgttgagttcatgcctgtttgcattgtggtcgttgagggcaaatgctttgttttgaaca-----------------gaaaaacagaagacatgaatctta 6509369  T
Q  354 gtgatttgctgcttgctatggcatcaatttcagatcaataagttaccgcggagtcaacggttccaaatgcataacattacagatttttgttccttctatt 453  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||||||  || |||||||| | |||||| ||||| || ||||||||| |||||||||    
T  6509368 gtgattggctgcttgttatggcatcaatttgagatcaataagttaccgcaaaggcaacggtttccaatgcacaacataacggatttttgtcccttctatt 6509269  T
Q  454 gtgctgctttctccattatacacaaacttcannnnnnnnncttcaattgtgttataagcttatcctcatttttcttcttcattattttacagggagaaac 553  Q
    ||||| ||||||||||||||||||||| |||         |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  6509268 gtgcttctttctccattatacacaaacatcatttttttt-cttcaattgtgttataggcttatcctcatttttctacttcattattttaaagggagaaac 6509170  T
Q  554 atgcggtggaggagtcccatagacaattaacgtatttttcaattaatctgaaagagattttggcctactacaacattaaaagaaaaaatcaatgtaaagg 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  6509169 atgcggtggaggagtcccatagacaattaacgtatttttcaattaatctggaagagatttttgcctactacaacattaaa--aaaaaatcaatgtaaagg 6509072  T
Q  654 aagaacnnnnnnngcaacaacctaactcggtgtgtggtgatatctattttgtcaaa 709  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  6509071 aagaacaaaaaaagcaacaacctaactcggtgtgtggtgatatctattttgtcaaa 6509016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 6509645 - 6509597
Alignment:
Q  91 caactttgtctaaatgaatcaaccactataataacttggctcttgaaaa 139  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  6509645 caactttgtctaaacgaatcaaccactataatcacttggctcttgaaaa 6509597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 6509759 - 6509720
Alignment:
Q  33 agaacaacaacggaaaaagattaaacatgagaaacttgaa 72  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  6509759 agaacaacaacgtaaaaagatgaaacatgagaaacttgaa 6509720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 38028898 - 38028852
Alignment:
Q  293 caaatactttgttttgaacatggttagataaagatgagaaaaacaga 339  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  38028898 caaatgctttgttttgaacatggttagataaagatgagaaaaacaga 38028852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 38029181 - 38029133
Alignment:
Q  91 caactttgtctaaatgaatcaaccactataataacttggctcttgaaaa 139  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  38029181 caactttgtctaaacgaatcaaccactataatcacttggctcttgaaaa 38029133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 581334 - 581373
Alignment:
Q  33 agaacaacaacggaaaaagattaaacatgagaaacttgaa 72  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  581334 agaacaacaacggaaaaagatgaaacatgagaaacttgaa 581373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 581641 - 581680
Alignment:
Q  33 agaacaacaacggaaaaagattaaacatgagaaacttgaa 72  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  581641 agaacaacaacggaaaaagatgaaacatgagaaacttgaa 581680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Complemental strand, 38028996 - 38028963
Alignment:
Q  254 tgttgagttcatgcctgtttgcattgtggtcgtt 287  Q
    ||||||||||||||||||||||||||||||||||    
T  38028996 tgttgagttcatgcctgtttgcattgtggtcgtt 38028963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 670 - 709
Target Start/End: Complemental strand, 44969428 - 44969389
Alignment:
Q  670 acaacctaactcggtgtgtggtgatatctattttgtcaaa 709  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44969428 acaacctaactcggtgtgtggtgatatctattttgtcaaa 44969389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 670 - 709
Target Start/End: Complemental strand, 35331197 - 35331158
Alignment:
Q  670 acaacctaactcggtgtgtggtgatatctattttgtcaaa 709  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35331197 acaacctaactcggtgtgtggtgatatctattttgtcaaa 35331158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University