View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_high_35 (Length: 360)
Name: NF1166_high_35
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 46909223 - 46909348
Alignment:
| Q |
28 |
agttaagagagggtcatcttctaatgaatttcaacttcttggcaaggattgtgtgtttcattaatctgcttcaggattcataattgttaccactcatagg |
127 |
Q |
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| T |
46909223 |
agttaagagagggtcatcttctaatgaatttcaacttcttggtaaggattgtgtgtttcattaatctgcttcaggattcataattgttaccactcat--- |
46909319 |
T |
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| Q |
128 |
aggagtgaataagacatcgcttttggtgg |
156 |
Q |
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| T |
46909320 |
aggagtgaataagacatcgcttttggtgg |
46909348 |
T |
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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 46909396 - 46909476
Alignment:
| Q |
161 |
ataattcttattacttcattgaatgaatggaaaagtgaatatacatatacaagagtgaagaggtggataacgaccctaact |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46909396 |
ataattcttattacttcattgaatgaatggaaaagtgaatatacatatacaagagtgaagaggtggataaccaccctaact |
46909476 |
T |
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