View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_high_36 (Length: 351)

Name: NF1166_high_36
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_high_36
NF1166_high_36
[»] chr5 (6 HSPs)
chr5 (10-215)||(15291086-15291286)
chr5 (289-345)||(15290920-15290976)
chr5 (156-211)||(15285059-15285116)
chr5 (289-345)||(32425068-32425124)
chr5 (289-345)||(36415961-36416017)
chr5 (289-345)||(285342-285398)
[»] chr2 (1 HSPs)
chr2 (289-345)||(4723682-4723738)
[»] chr7 (6 HSPs)
chr7 (289-345)||(36920901-36920957)
chr7 (289-345)||(21153168-21153224)
chr7 (289-345)||(33212142-33212198)
chr7 (289-345)||(42640959-42641015)
chr7 (316-345)||(27075611-27075640)
chr7 (316-345)||(27202671-27202700)
[»] chr3 (4 HSPs)
chr3 (289-345)||(11335201-11335257)
chr3 (289-345)||(40159725-40159781)
chr3 (289-345)||(41369695-41369751)
chr3 (289-345)||(50745476-50745532)
[»] chr4 (5 HSPs)
chr4 (299-345)||(4489698-4489744)
chr4 (289-342)||(12241173-12241226)
chr4 (289-345)||(39880929-39880985)
chr4 (289-345)||(51540746-51540802)
chr4 (289-345)||(53356976-53357032)
[»] chr8 (3 HSPs)
chr8 (289-345)||(9550322-9550378)
chr8 (289-345)||(31806415-31806471)
chr8 (289-345)||(40719543-40719599)
[»] chr6 (2 HSPs)
chr6 (292-342)||(27102219-27102269)
chr6 (292-342)||(27144041-27144091)
[»] scaffold0001 (1 HSPs)
scaffold0001 (298-342)||(404873-404917)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 15291286 - 15291086
Alignment:
Q  10 aaaaatatacgaggaagccttttagaataaaagatgagacccaggatcttgaaatagctcactcttctagactaaataaatattatttcttactttccaa 109  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15291286 aaaagtatacgaggaagccttttagaataaaa-atgagacccaggatcttgaaatagctcactcttttagactaaataaatattatttcttactttccaa 15291188  T
Q  110 tctgcacacaatagtattcaataataaataaataaataagagcacctggtatcatgtgatccatgttttgtaaaaaaataaaaggtgtggttcaagtgaa 209  Q
    |||||||||||||| ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||    
T  15291187 tctgcacacaatagaattcaataataaataa----ataagagcacctggtatcatgtgatccatgttttgtaaaaaaataaaaagagtggtgcaagtcaa 15291092  T
Q  210 aacaat 215  Q
    ||||||    
T  15291091 aacaat 15291086  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 15290976 - 15290920
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  15290976 atcaaaagggagaaaattaaaattattataaaagttgtaccaaagagttgtacatat 15290920  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 15285116 - 15285059
Alignment:
Q  156 tggtatcatgtgatccatgttttgtaaa--aaaataaaaggtgtggttcaagtgaaaa 211  Q
    ||||||||||||||||||||||||||||  ||||||||| |||| |||||||| ||||    
T  15285116 tggtatcatgtgatccatgttttgtaaaaaaaaataaaaagtgttgttcaagtcaaaa 15285059  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 32425068 - 32425124
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    ||||||||  ||||||||||||| || || |||||||||||||| ||||||||||||    
T  32425068 atcaaaagatagaaaattaaagttgtcatgaaagttgtaccaaatagttgtacatat 32425124  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 36416017 - 36415961
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||||| |||||||  ||||| || || |||||||||||||||||||||||||||    
T  36416017 atcaaaagagagaaaaccaaagttgtcatgaaagttgtaccaaagagttgtacatat 36415961  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 285342 - 285398
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    ||||||||  ||||||||||||| |  || |||||||||| ||||||||||||||||    
T  285342 atcaaaagatagaaaattaaagttggcatgaaagttgtactaaagagttgtacatat 285398  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 4723682 - 4723738
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||    
T  4723682 atcaaaagagagaaaactaaagttgttataaaagttgtaccaaagagttgtacatat 4723738  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 36920901 - 36920957
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||| | |||||||| ||||| || ||||||||||||||||||||||||||||||    
T  36920901 atcaaatgagagaaaatcaaagttgtaataaaagttgtaccaaagagttgtacatat 36920957  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 21153168 - 21153224
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||||| |||||||| ||||| || || |||||||||||||| ||||||||||||    
T  21153168 atcaaaagagagaaaatcaaagttgtcatgaaagttgtaccaaaaagttgtacatat 21153224  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 33212142 - 33212198
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||| | |||| ||||||||| || ||| ||||||||||||||||||||||||||    
T  33212142 atcaaatgagagacaattaaagttgtcatagaagttgtaccaaagagttgtacatat 33212198  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 42640959 - 42641015
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||||  |||||||| |||||  | ||||||||||||||||||||||||||||||    
T  42640959 atcaaaaaagagaaaatcaaagttatcataaaagttgtaccaaagagttgtacatat 42641015  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Original strand, 27075611 - 27075640
Alignment:
Q  316 ataaaagttgtaccaaagagttgtacatat 345  Q
    ||||||||||||||||||||||||||||||    
T  27075611 ataaaagttgtaccaaagagttgtacatat 27075640  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 345
Target Start/End: Complemental strand, 27202700 - 27202671
Alignment:
Q  316 ataaaagttgtaccaaagagttgtacatat 345  Q
    ||||||||||||||||||||||||||||||    
T  27202700 ataaaagttgtaccaaagagttgtacatat 27202671  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 11335257 - 11335201
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||| | ||||||| |||||| || ||||||||||||||||||||||||||||||    
T  11335257 atcaaatgagagaaaactaaagttgtaataaaagttgtaccaaagagttgtacatat 11335201  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 40159781 - 40159725
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||||| |||||||  ||||| || || |||||||||||||||||||||||||||    
T  40159781 atcaaaagagagaaaaccaaagttgtcatgaaagttgtaccaaagagttgtacatat 40159725  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 41369695 - 41369751
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||||| ||||||| |||||| || |||||||||||||||||||  |||||||||    
T  41369695 atcaaaagagagaaaactaaagttgtcataaaagttgtaccaaagaagtgtacatat 41369751  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 50745476 - 50745532
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||| | |||| ||||||||| || ||| ||||||||||||||||||||||||||    
T  50745476 atcaaatgagagacaattaaagttgtcatagaagttgtaccaaagagttgtacatat 50745532  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 4489744 - 4489698
Alignment:
Q  299 agaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    ||||||||||||| || || |||||||||||||||||||||||||||    
T  4489744 agaaaattaaagttgtcatgaaagttgtaccaaagagttgtacatat 4489698  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 12241173 - 12241226
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtaca 342  Q
    |||||||| ||||||| |||||| || ||||| ||||||| |||||||||||||    
T  12241173 atcaaaagagagaaaaataaagttgtcataaaggttgtacaaaagagttgtaca 12241226  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 39880985 - 39880929
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||||| |||||||  ||||| || || |||||||||| ||||||||||||||||    
T  39880985 atcaaaagagagaaaaccaaagttgtcatgaaagttgtacgaaagagttgtacatat 39880929  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 51540802 - 51540746
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||||| |||||||  ||| | || ||||||||||||||||||||||||| ||||    
T  51540802 atcaaaagagagaaaaccaaaattgtcataaaagttgtaccaaagagttgtatatat 51540746  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 53357032 - 53356976
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||| | |||| ||| ||||| || ||| ||||||||||||||||||||||||||    
T  53357032 atcaaatgagagacaatcaaagttgtcatagaagttgtaccaaagagttgtacatat 53356976  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 9550378 - 9550322
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    ||||||||  ||||||||||||| || || ||||||||| |||||||||||||||||    
T  9550378 atcaaaagatagaaaattaaagttgtcatgaaagttgtatcaaagagttgtacatat 9550322  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 31806415 - 31806471
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||| | ||||||| |||||| || |||||||||||||||||||||| |||||||    
T  31806415 atcaaatgagagaaaactaaagttgtaataaaagttgtaccaaagagttatacatat 31806471  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 40719599 - 40719543
Alignment:
Q  289 atcaaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtacatat 345  Q
    |||||||| |||||||  ||||| || ||||||||||||| ||||||||||||||||    
T  40719599 atcaaaagagagaaaaccaaagttgtcataaaagttgtacgaaagagttgtacatat 40719543  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 27102219 - 27102269
Alignment:
Q  292 aaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtaca 342  Q
    ||||| |||||||| ||||| || || ||||||||||||||||||||||||    
T  27102219 aaaagagagaaaatcaaagttgtcatgaaagttgtaccaaagagttgtaca 27102269  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 27144041 - 27144091
Alignment:
Q  292 aaaagggagaaaattaaagtcgttataaaagttgtaccaaagagttgtaca 342  Q
    ||||| |||||||| ||||| || || ||||||||||||||||||||||||    
T  27144041 aaaagagagaaaatcaaagttgtcatgaaagttgtaccaaagagttgtaca 27144091  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 404873 - 404917
Alignment:
Q  298 gagaaaattaaagtcgttataaaagttgtaccaaagagttgtaca 342  Q
    |||||||  ||||| || |||||||||||||||||||||||||||    
T  404873 gagaaaaacaaagttgtcataaaagttgtaccaaagagttgtaca 404917  T

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