View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_high_48 (Length: 312)
Name: NF1166_high_48
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 1560647 - 1560945
Alignment:
| Q |
1 |
tacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaaatttgtttctcaaaagcgtcgaagatttc |
100 |
Q |
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| T |
1560647 |
tacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaaatttgtttctcaaaagcgtcgaagatttc |
1560746 |
T |
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| Q |
101 |
ttatctttaataagaatttgagtaaaggctaatgatggttcaaggtactttctttgacagccaacaatttgtccagttatggtaccaaaagtcggtaact |
200 |
Q |
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| T |
1560747 |
ttatctttaataagaatttgagtaaaggctaatgatggttcaaggtactttctttgacagccaacaatttgtccagttatggtaccaaaagtcggtaact |
1560846 |
T |
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| Q |
201 |
ctacaccgcaattaggagcgaaaacttcaacgaaatcgtcttcgggaggtttagagttgacaatattcatccaaaattaatgcttgatctgttctattc |
299 |
Q |
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| T |
1560847 |
ctacaccgcaattaggagcgaaaacttcaacgaaatcgtcttcgggaggtttagagttgacaatattcatccaaaattaatgcttgatctgttctattc |
1560945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 72 - 263
Target Start/End: Original strand, 2091117 - 2091308
Alignment:
| Q |
72 |
atttgtttctcaaaagcgtcgaagatttcttatctttaataagaatttgagtaaaggctaatgatggttcaaggtactttctttgacagccaacaatttg |
171 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2091117 |
atttgtttctcaaaagcgacaaagatttcttatctttaataagaatttgagaaaatgctaatgatggttcaaggtactttctttgacagccaacaatgtg |
2091216 |
T |
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| Q |
172 |
tccagttatggtaccaaaagtcggtaactctacaccgcaattaggagcgaaaacttcaacgaaatcgtcttcgggaggtttagagttgacaa |
263 |
Q |
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| T |
2091217 |
tccagttatggtaccgaaagtcggtaactctataccgcaattaggagcgaaaacttcaacgaaatcatcttcgggaggtttgcagttgacaa |
2091308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2090606 - 2090680
Alignment:
| Q |
1 |
tacatgtatcatttacaatttaatacataaagatgttgacactcaagataaaaatgaaccttcctagtcaaattt |
75 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090606 |
tacatgtatcatttacaatttaatacataaatatgttgacactcaagataaaaatgaaccttcctagtcaaattt |
2090680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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