View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1166_high_5 (Length: 681)
Name: NF1166_high_5
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 42 - 310
Target Start/End: Original strand, 48018141 - 48018405
Alignment:
| Q |
42 |
atatatattatttttacaatgagaatgtatatagtaaaattgtatgtatgagaaataaaccttccagatgagtatggtgatgtcaaattgcttggcatta |
141 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48018141 |
atatatattatttttacaatgaaaatgtatatagtaaaattgtatgtatgagaaataaaccttccagatgagtatggtgatgtcaaattgcttggcatta |
48018240 |
T |
|
| Q |
142 |
taagaagagagaggagaaatggaagctccaatggctatcttgctatttgtttgaacaaaaccagcacaaagaaggttgtagcatccagttgcttgatatg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48018241 |
taagaagagagaggagaaatggaagctccaatggctatcttgctatttgtttgaacaaaaccagcacaaagaaggttgtagcatccagttgcttgatatg |
48018340 |
T |
|
| Q |
242 |
tgtcactctgcgtgcttataattaaattgtttaatcaacaagaattttaacgagtaaaattagagaata |
310 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48018341 |
tgtcactctgcgtgctta----taaattgtttaatcaacaagaattttaacgagtaaaattagagaata |
48018405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 404 - 540
Target Start/End: Original strand, 48018468 - 48018608
Alignment:
| Q |
404 |
ctaaccgtccagtaagtaaataatctgggtctgctgtcaccataaagctccggactgacctaactagtgcaattatcaaaagcttcagaataatg----n |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48018468 |
ctaaccgtccagtaagtaaataatctgggtctgctgtcaccataaagctccggactgacctaactagtgcaattatcaaaagcttcagaataatgttttt |
48018567 |
T |
|
| Q |
500 |
nnnnnnnatttgaatttcttcatatcgaataatgtttcttc |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
48018568 |
ttttttaatttgaatttcttcatatcgaataatgtttcttc |
48018608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 633 - 671
Target Start/End: Original strand, 48018809 - 48018847
Alignment:
| Q |
633 |
ttactataatctgaaattgaaaattggagtttagaataa |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48018809 |
ttactataatctgaaattgaaaattggagtttagaataa |
48018847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 100 - 252
Target Start/End: Complemental strand, 35409350 - 35409198
Alignment:
| Q |
100 |
accttccagatgagtatggtgatgtcaaattgcttggcattataagaagagagaggagaaatggaagctccaatggctatcttgctatttgtttgaacaa |
199 |
Q |
| |
|
|||||||| ||||| || | |||||| |||| ||| || |||||||||||| |||||| |||| ||||||||| ||||| || ||||||||||||| || |
|
|
| T |
35409350 |
accttccaaatgaggattgaaatgtcatattggttgccagtataagaagagacaggagatatggcagctccaatagctattttactatttgtttgaataa |
35409251 |
T |
|
| Q |
200 |
aaccagcacaaagaaggttgtagcatccagttgcttgatatgtgtcactctgc |
252 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||||| | |||||||||| |
|
|
| T |
35409250 |
aaccagcacaaagaagattgtaacatccggttgcttgataagagtcactctgc |
35409198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 407 - 469
Target Start/End: Complemental strand, 35408719 - 35408657
Alignment:
| Q |
407 |
accgtccagtaagtaaataatctgggtctgctgtcaccataaagctccggactgacctaacta |
469 |
Q |
| |
|
|||||||| || || ||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
35408719 |
accgtccaatacgtgaataatctgggtctgttgtcaccataaagctccggactgacctgacta |
35408657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University