View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_high_50 (Length: 293)

Name: NF1166_high_50
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_high_50
NF1166_high_50
[»] chr2 (1 HSPs)
chr2 (30-280)||(44608150-44608400)
[»] chr8 (1 HSPs)
chr8 (85-123)||(5055891-5055929)
[»] chr1 (3 HSPs)
chr1 (215-277)||(34372473-34372535)
chr1 (87-148)||(33717198-33717259)
chr1 (84-148)||(29820447-29820511)
[»] chr5 (1 HSPs)
chr5 (215-279)||(38779440-38779504)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 280
Target Start/End: Original strand, 44608150 - 44608400
Alignment:
Q  30 cagtagacttgttagagctgcacactgtagaagtaaacattgtttcaaatctatctgttagaacaacagccctggttcaaaagtaaaaagatacaaaaga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44608150 cagtagacttgttagagctgcacactgtagaagtaaacattgtttcaaatctatctgttagaacaacagccctggttcaaaagtaaaaagatacaaaaga 44608249  T
Q  130 tgcaagtagagaaaacacatatttgatcacttggtttgaccatctctgtgttttcgaccgtagaggctacaatgcctctttataatcaagcttatgattt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44608250 tgcaagtagagaaaacacatatttgatcacttggtttgaccatctctgtgttttcgaccgtagaggctacaatgcctctttataatcaagcttatgattt 44608349  T
Q  230 acaaagtacaacctgtacttaaatgctacagtccaatttacaagattacct 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44608350 acaaagtacaacctgtacttaaatgctacagtccaatttacaagattacct 44608400  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 5055929 - 5055891
Alignment:
Q  85 tgttagaacaacagccctggttcaaaagtaaaaagatac 123  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  5055929 tgttagaacaacaaccctggttcaaaagtaaaaagatac 5055891  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 34372473 - 34372535
Alignment:
Q  215 tcaagcttatgatttacaaagtacaacctgtacttaaatgctacagtccaatttacaagatta 277  Q
    ||||||||| | ||||||||||||||| |||| |||||| ||||  |||| ||||||||||||    
T  34372473 tcaagcttagggtttacaaagtacaacttgtatttaaatactacgatccagtttacaagatta 34372535  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 33717198 - 33717259
Alignment:
Q  87 ttagaacaacagccctggttcaaaagtaaaaagatacaaaagatgcaagtagagaaaacaca 148  Q
    ||||||||||| |||| ||||||||||||| |||||| ||| ||||||  |||||| |||||    
T  33717198 ttagaacaacaaccctagttcaaaagtaaacagatacgaaaaatgcaaacagagaacacaca 33717259  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 29820447 - 29820511
Alignment:
Q  84 ctgttagaacaacagccctggttcaaaagtaaaaagatacaaaagatgcaagtagagaaaacaca 148  Q
    |||||||||||||| |||||||| ||||| ||| |||||||||| | | || ||||||| |||||    
T  29820447 ctgttagaacaacaaccctggtttaaaagaaaacagatacaaaaaagggaaatagagaatacaca 29820511  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 38779504 - 38779440
Alignment:
Q  215 tcaagcttatgatttacaaagtacaacctgtacttaaatgctacagtccaatttacaagattacc 279  Q
    ||||||||| | ||| || |||||||| |||  |||||| |||||||||| ||||||||||||||    
T  38779504 tcaagcttagggtttgcatagtacaacttgtgtttaaatactacagtccagtttacaagattacc 38779440  T

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