View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_high_6 (Length: 656)
Name: NF1166_high_6
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 39 - 335
Target Start/End: Complemental strand, 3553769 - 3553473
Alignment:
| Q |
39 |
tacaacgtgaatacaatgagctaaaatcactccaagaaactccaaatactacaccacatctagatccctattactcaactccaaatactactctattatt |
138 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3553769 |
tacaacgtgaatacaatgagttaaaatcactccaagaaactccaaatactacaccacatctagatccctattactcaactccaaatactactctattatt |
3553670 |
T |
|
| Q |
139 |
aacatcatcgttatagtgctggatccaagacaaagcctcttgtgacaaagctctgatttgaagatgatcaacaaaaggttaaatcttttaccaaatttac |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3553669 |
aacatcatcgttatagtgctggatccaagacaaagcctcttgtgacaaagctctgatttgaagatgatcgacaaaaggttaaatcttttaccaaatttac |
3553570 |
T |
|
| Q |
239 |
atcaagttatgaagtcaaagtctgatctgaagtcaaacacggatatgaagacagagctctgcaggatcaagttaacagtcaaggctctgaacaacat |
335 |
Q |
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| T |
3553569 |
atcaagttatgaagtcaaactctgatctgaagtcaaacacggatctgaagacagagctctgcaggatcaagttaatagtcaaggctctgaacaacat |
3553473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 333 - 648
Target Start/End: Complemental strand, 3546191 - 3545876
Alignment:
| Q |
333 |
cattcaatactcccttnnnnnnntatccaatattaattacgatcatgatctaacaaccacatgttgatatttnnnnnnnnnnnnn-tgaaatttgattga |
431 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3546191 |
cattcaatactcccttaaaaaaatatccaatattaattacgatcatgatctaacaaccacatgttgatatttaaaaaaaataaatatgaaatttgattga |
3546092 |
T |
|
| Q |
432 |
aagtctatatataattatatcgatacataaaatttgcatccacatatataagaacggaatatttgcaacgggcgtggtgaaacatatttaacggattttt |
531 |
Q |
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|| ||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3546091 |
aaatctgtatacaattatatcgatacataaaatttgcatccacatatataagcacggaatatttgcaacgggcgtggtgaa-catatttaacggattttg |
3545993 |
T |
|
| Q |
532 |
gcatatttaacattacataattgctgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttatataatcaccatatt |
631 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3545992 |
gcatatttaacattacataattgctgataattttaattcaacatctttaaacatttaacaagtttaccaatgtaattgttttttatataatcaccatatt |
3545893 |
T |
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| Q |
632 |
attacacgacctatgat |
648 |
Q |
| |
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||||||||||||||||| |
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| T |
3545892 |
attacacgacctatgat |
3545876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 622
Target Start/End: Complemental strand, 24865081 - 24864999
Alignment:
| Q |
540 |
aacattacataattgctgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttatataat |
622 |
Q |
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|
|||||||||| | | ||||||||||| ||| || || |||||||||| ||||| |||| ||| ||||| ||||||||||||| |
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| T |
24865081 |
aacattacattaattctgataatttttatttaatatttttaaacattcaacaatattaaaaatttaattattttttatataat |
24864999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 540 - 613
Target Start/End: Original strand, 3421331 - 3421404
Alignment:
| Q |
540 |
aacattacataattgctgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgtttt |
613 |
Q |
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|||||||||| | || |||||||||| ||| || | |||||||||||| |||| |||| ||||||||||||||| |
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| T |
3421331 |
aacattacattaatgttgataatttttatttaatacctttaaacatttcacaatattagcaatgtaattgtttt |
3421404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 618
Target Start/End: Original strand, 21118553 - 21118615
Alignment:
| Q |
556 |
tgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttata |
618 |
Q |
| |
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|||||||||| ||| || || ||||||||||| |||| |||| |||||||||| ||||||||| |
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|
| T |
21118553 |
tgataatttttatttaatatttttaaacatttgacaatattaacaatgtaattattttttata |
21118615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 556 - 619
Target Start/End: Complemental strand, 494332 - 494269
Alignment:
| Q |
556 |
tgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttatat |
619 |
Q |
| |
|
|||||||||| ||| || |||||||||||||| |||| |||| ||||| |||| |||||||||| |
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|
| T |
494332 |
tgataattttcatttaatatctttaaacatttgacaatattaacaatgaaattattttttatat |
494269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 575 - 622
Target Start/End: Complemental strand, 7183937 - 7183890
Alignment:
| Q |
575 |
tctttaaacatttaacaagattaccaatgtaattgttttttatataat |
622 |
Q |
| |
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|||||||| |||| |||| ||||| ||||||||||||||||||||||| |
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| T |
7183937 |
tctttaaatatttcacaatattactaatgtaattgttttttatataat |
7183890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 10252728 - 10252634
Alignment:
| Q |
181 |
tgacaaagctctgatttgaagatgatcaacaaaaggttaaatcttttaccaaatttacatcaagttatgaagtcaaagtctgatctgaagtcaaa |
275 |
Q |
| |
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||||||||||||||| |||||||||| ||||||| || ||| || | | ||| | | |||||||||||||| ||| |||||||||||| |||| |
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| T |
10252728 |
tgacaaagctctgatctgaagatgatgaacaaaaagtcaaagctctaatcaagtgtgcatcaagttatgaaaacaagctctgatctgaaggcaaa |
10252634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 618
Target Start/End: Original strand, 3927602 - 3927664
Alignment:
| Q |
556 |
tgataattttaattcaacatctttaaacatttaacaagattaccaatgtaattgttttttata |
618 |
Q |
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||||||| || ||| ||||| ||||||||||| |||| |||| |||| ||||||||||||||| |
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|
| T |
3927602 |
tgataatatttatttaacatttttaaacatttcacaatattatcaatataattgttttttata |
3927664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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