View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_high_61 (Length: 259)
Name: NF1166_high_61
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_61 |
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| [»] scaffold0649 (1 HSPs) |
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Alignment Details
Target: scaffold0649 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 6467 - 6259
Alignment:
| Q |
30 |
gattcaaatgttatctgaagaagacaagaaaaaataaaccctaaaagatacacatcaagaatataaatgtttgtgctataaatgaagaaattgaagctcc |
129 |
Q |
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| T |
6467 |
gattcaaatgttatctgaagaagacaagaaaaaaaa---cctaaaagatacacatcaagaatataaatgtttgtgctataaatgaagaaattgaagctcc |
6371 |
T |
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| Q |
130 |
aataacgctttcatcctttcttcccattattccatcatgtaccagccacaactcttgtgcttgaagttgcgttgtagacctacaacgcacaaaaatagaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6370 |
aataacgctttcatcctttcttcccattattccatcatgtaccatacacaatgcttgtgcttgaagttgggttgtagacctacaacgcacaaaaatagaa |
6271 |
T |
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| Q |
230 |
cagaaacacgag |
241 |
Q |
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|||||||||||| |
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| T |
6270 |
cagaaacacgag |
6259 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 20968804 - 20968671
Alignment:
| Q |
32 |
ttcaaatgttatctgaagaagacaagaaaaaataaaccctaaaagatacacatcaagaata---taaatgtttgtgctataaatgaagaaattgaagctc |
128 |
Q |
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|||||||||||||| || ||||| |||||||| ||||||||| |||||||||||| | ||| ||||||||||||||||||||| |||| ||||| |
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| T |
20968804 |
ttcaaatgttatctaaaaaagacgagaaaaaa-----cctaaaagaaacacatcaagaagaacataattgtttgtgctataaatgaagatattgcagctc |
20968710 |
T |
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| Q |
129 |
caataacgctttcatcctttcttcccattattccatcat |
167 |
Q |
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| T |
20968709 |
tagtgactcgatcttcctttcttccaatcattccatcat |
20968671 |
T |
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