View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1166_high_62 (Length: 255)
Name: NF1166_high_62
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_62 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 44737762 - 44737998
Alignment:
| Q |
30 |
acaactgcctgtacccggttacttgtcagtcaccccacacccattccacatccttccttactttattctatccatttccataaca--ttttgaaatattc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44737762 |
acaactgcctgtacccggttacttgtcagtcaccccacacccattccacacccttccttactttattctatccatttccataacatgttttgaaatattc |
44737861 |
T |
|
| Q |
128 |
atcatgcttac---------tttctttgtttattctatccatcaacaaggagtgataatttttaaaattttatttacttatttcctcaaaatgattataa |
218 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44737862 |
atcatgcttacttttttttttttttttttttattctatccatcaacaaggagtgataatttttaaaattttatttacttatttcctcaaaatgattataa |
44737961 |
T |
|
| Q |
219 |
atannnnnnnngaatttattaatgtgtttccggtcta |
255 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |
|
|
| T |
44737962 |
atattttttttgaatttattaatgtgttttcggtcta |
44737998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University