View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_high_64 (Length: 252)
Name: NF1166_high_64
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_64 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 5034968 - 5035180
Alignment:
| Q |
30 |
gtttccattgtgcaaattagtttttgtagcaggttttaatcgaaatcttgcattcatcactggtgaggcaagttcagcctttattctcctttccctgcaa |
129 |
Q |
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| T |
5034968 |
gtttccattgtgcaaattagtttttgtag----------tcgaaatcttgcattcattactagtgaggcaagttcagcttttattctcctttccctgcaa |
5035057 |
T |
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| Q |
130 |
ctggttcttgaagctcattgatattgtagaggaggacgaggaccacgaaacgcatatcttgcaacacgaccaccaaccactttgacctcttgaagaaggt |
229 |
Q |
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| T |
5035058 |
ctggttcttgaagctcattgatattgtagaggaggacgaggaccacgaaacgcatatcgagcaacacgaccaccaaccactttgacctcttgaagaaggt |
5035157 |
T |
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| Q |
230 |
cacagctcttgcagagattctta |
252 |
Q |
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| T |
5035158 |
cacagctcttgcagagattctta |
5035180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 2533149 - 2533246
Alignment:
| Q |
37 |
ttgtgcaaattagtttttgtagcaggttttaatcgaaatcttgcattcatcactggtgaggcaagttcagcctttattctcctttccctgcaactggt |
134 |
Q |
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| T |
2533149 |
ttgtgcaaattagtttttgcagcaggttttaatcgaaatcctgcattcatcacttgtgaggcatgttcagctcttattctccattccctgcaagtggt |
2533246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 2490641 - 2490681
Alignment:
| Q |
207 |
cactttgacctcttgaagaaggtcacagctcttgcagagat |
247 |
Q |
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| T |
2490641 |
cactttggcctcttgaagaaggtcacagttcttgcagagat |
2490681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 2525262 - 2525313
Alignment:
| Q |
198 |
accaccaaccactttgacctcttgaagaaggtcacagctcttgcagagattctta |
252 |
Q |
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| T |
2525262 |
accaccaaccactttgacctctt---gaaggtcacagttcctgcagagattctta |
2525313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 2460107 - 2460147
Alignment:
| Q |
207 |
cactttgacctcttgaagaaggtcacagctcttgcagagat |
247 |
Q |
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| T |
2460107 |
cactttgacctcttgaagaaggtcacaattcttgcaaagat |
2460147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 2533820 - 2533867
Alignment:
| Q |
198 |
accaccaaccactttgacctcttgaagaaggtcacagctcttgcagagatt |
248 |
Q |
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| T |
2533820 |
accaccaaccactttgagctctt---gaaggtcacagttcttgcagagatt |
2533867 |
T |
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