View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1166_high_67 (Length: 252)
Name: NF1166_high_67
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_67 |
 | |
|
| [»] scaffold0008 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 6139591 - 6139798
Alignment:
| Q |
30 |
atattccaatcactccaagtgtaaatttaatattacattgacgaatgaaaaatgaagaataacatatgcgttagttgtattcatataattaaattgttag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6139591 |
atattccaatcactccaagtgtaaatttaatattacattgacgaatgaaaaatgaagaataacatatgcgttagttgtattcatataattaagttgttag |
6139690 |
T |
|
| Q |
130 |
atttctatatcttctgttgattaattttgcattcatgagtcaaatacgaatttaacatttgggtatgaaatgtatcagatttttaacaccatacatcatc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6139691 |
atttctatatcttctgttgattaattttgcattcatgagtcaaatacgaatttaacatttgggtctgaaatgtatcagatttttaacaccatacatcatc |
6139790 |
T |
|
| Q |
230 |
ttcgcaac |
237 |
Q |
| |
|
|||||||| |
|
|
| T |
6139791 |
ttcgcaac |
6139798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6139539 - 6139571
Alignment:
| Q |
1 |
tttaatttgtaattatatagtgtgttgccatat |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6139539 |
tttaatttgtaattatatagtgtgttgccatat |
6139571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7709 - 7677
Alignment:
| Q |
1 |
tttaatttgtaattatatagtgtgttgccatat |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7709 |
tttaatttgtaattatatagtgtgttgccatat |
7677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18259 - 18231
Alignment:
| Q |
1 |
tttaatttgtaattatatagtgtgttgcc |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18259 |
tttaatttgtaattatatagtgtgttgcc |
18231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25364358 - 25364390
Alignment:
| Q |
1 |
tttaatttgtaattatatagtgtgttgccatat |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
25364358 |
tttaatttgtaattatatagtgtgttgccatat |
25364390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University