View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_high_8 (Length: 623)
Name: NF1166_high_8
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 10 - 594
Target Start/End: Complemental strand, 37406146 - 37405562
Alignment:
| Q |
10 |
ccacagagaacggcacgcttgttatatcttcttggaaaagatgaggggaatgcaattgaaggagatggtgatgatgaccaaccaagaaaatttccatttt |
109 |
Q |
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| T |
37406146 |
ccacagagaacggcacgcttgttatatcttcttggaaaagatgagggaaatgcaattgaaggagatggtgatgatgaccaaccaagaaaatttccatttt |
37406047 |
T |
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| Q |
110 |
tatttgaattgtcaagtttgaacaatttgcttccgannnnnnncacggaaccaaccaggcagttttcccttgatttcccatgttccaaagatgaattaca |
209 |
Q |
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| T |
37406046 |
tatttgaattgtcaagtttgaacaatttgcttccgatttttttcaccgaaccaaccaggcagttttcccttgatttcccatgttccaaagctgaattaca |
37405947 |
T |
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| Q |
210 |
aatattacatagaaagcaacaacaacctctgcagggtgcttttgtttctccactttggtgatgagaactgcaaatgtttctgcaagcattgcaaacatgc |
309 |
Q |
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| T |
37405946 |
aatattacatagaaagcaacaacaacctctgcagggtgcttttgtttctccactttggtgatgagaactgcaaatgtttctgcaagcattgcaaacatgc |
37405847 |
T |
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| Q |
310 |
acagtagtgtttgtaggagataaatcaccctttttgtatcttctgtatttggatgtaacttccattgtttgcagtgtgagcccagatagcatgcatgcag |
409 |
Q |
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| T |
37405846 |
acagtagtgtttgtaggagataaatcaccctttttgtatcttctgtatttggatgtaacttccattgtttgcagtgtgagcccagatagcatgcatgcag |
37405747 |
T |
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| Q |
410 |
catcaagatatttataatgcagatttgtaggcacaaagacacactgaaatgtatgttagaatttgttttgggactaatttcaaatttgtgttgtacactt |
509 |
Q |
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| T |
37405746 |
catcaagatatttataatgcagatttgtaggcacaaagacacactgaaatgtatgttagaatttgttttgggactaatttcaaatttgtgttgtacactt |
37405647 |
T |
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| Q |
510 |
atatgaacatattttcaagtcacttttcatattatgtggactctcaacattcccttggctcttaggattggacatttgaaacttg |
594 |
Q |
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| T |
37405646 |
atatgaacatattttcaagtcacttttcatattatgtggactctcaacattcccttggctcttaggattggacatttgaaacttg |
37405562 |
T |
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