View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_high_9 (Length: 557)
Name: NF1166_high_9
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 37316014 - 37316562
Alignment:
| Q |
1 |
cattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgatacatttggaggcaaagttcca |
100 |
Q |
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| T |
37316014 |
cattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgatacatttggaggcaaagttcca |
37316113 |
T |
|
| Q |
101 |
ggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgaagaatcccatac |
200 |
Q |
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| T |
37316114 |
ggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgaagaatcccatac |
37316213 |
T |
|
| Q |
201 |
cagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttagaactcctagttgttcacgagccatggatagatttttaag |
300 |
Q |
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| T |
37316214 |
cagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttagaactcctagttgttcacgagccatggatagatttttaag |
37316313 |
T |
|
| Q |
301 |
gtagagtgaccaattgagtctttggtaatagtgtgctccaaagaccaattagtggtgactataattctggcagaagaaggaataacaagttagtattata |
400 |
Q |
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| T |
37316314 |
gtagagtgaccaattgagtctttggtaatagtgtgctccaaagaccaattagtggtgactataattctggcagaagaaggaataacaagttagtattata |
37316413 |
T |
|
| Q |
401 |
taggtgtttcagtaccacgctatcaagtgactttttgttgaagtttactaaaatcacaaactcatgaataaacgctataagttagttagtgggaaaagcc |
500 |
Q |
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| T |
37316414 |
taggtgtttcagtgccacgctatcaagtgactttttgttgaagtttactaaaatcacaaactcatgaataaacgctataagttagttagttggaaaagcc |
37316513 |
T |
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| Q |
501 |
ctattcgctagaaccattttggacttgtcaaagccctcgtgtctgtggt |
549 |
Q |
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| T |
37316514 |
ctattcgctagaaccattttggacttgtcaaagccctcatgtgtgtggt |
37316562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 89 - 382
Target Start/End: Complemental strand, 19207188 - 19206901
Alignment:
| Q |
89 |
ggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtga |
188 |
Q |
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| T |
19207188 |
ggcaaagttccaggcttgagtgcatctgggtgtgtgtagtatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgc |
19207089 |
T |
|
| Q |
189 |
agaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttagaactcctagttgttcacgagccatgga |
288 |
Q |
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| T |
19207088 |
agaatcccataccagcaattatgatggctgtgaaaaggtaccattgtgttttggctgcatgaagagaagttagaactcctagctgttcatgagccaagg- |
19206990 |
T |
|
| Q |
289 |
tagatttttaaggtagagtgaccaattgagtctttggtaatagtgtgctccaaagaccaattagtggtgactataattctggcagaagaaggaa |
382 |
Q |
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| T |
19206989 |
tagattttgaaggtggagtgaccaattgagtctttggttatagtgtgctccaaacac----tagtggtgactat-gttctggtagaagaaggaa |
19206901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 38883908 - 38883811
Alignment:
| Q |
164 |
cagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag |
261 |
Q |
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||||| || ||||| |||||||| ||||||||||||||||| || ||||| || ||||||||||||||||||||||| || ||||||| ||| |||| |
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| T |
38883908 |
cagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgttttagccacatcaagcgcatttag |
38883811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 261
Target Start/End: Complemental strand, 38893140 - 38893003
Alignment:
| Q |
124 |
gtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaa |
223 |
Q |
| |
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||||||||| | ||| || |||||||||||| | ||||||||| || ||||| ||||| || ||||||||||| |||||||| ||||| |||||||| |
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| T |
38893140 |
gtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatcagtaaagaatcccattccagcaatgatgattgctgtgaag |
38893041 |
T |
|
| Q |
224 |
tggtaccattgtgttttggctgcatcaagggcagttag |
261 |
Q |
| |
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|| |||||||| ||||| || ||||||| ||| |||| |
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| T |
38893040 |
tgataccattgcgttttcgccacatcaagtgcatttag |
38893003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 38884061 - 38883967
Alignment:
| Q |
11 |
ccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgatacatttggaggcaaagttccaggctt |
105 |
Q |
| |
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|||||||| |||||||||||||| |||| || || ||||||| ||| |||||||| || || ||||||||||| |||||||| || || ||||| |
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| T |
38884061 |
ccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgatacattgggaggcaatgtaccgggctt |
38883967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 16223293 - 16223184
Alignment:
| Q |
161 |
atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagtta |
260 |
Q |
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|
||||||||||| ||||||||||| |||||||||||||| |||||||| | || | ||||| || ||| ||||||| ||||| ||||||| ||| ||| |
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| T |
16223293 |
atgcagaaaagatcatatgcatcagtgaagaatcccattccagcaatcacaattgtagtgaagtgatacaattgtgtcttggccacatcaagtgcattta |
16223194 |
T |
|
| Q |
261 |
gaactcctag |
270 |
Q |
| |
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| |||||||| |
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| T |
16223193 |
gcactcctag |
16223184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 30620974 - 30621063
Alignment:
| Q |
160 |
tatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatc |
249 |
Q |
| |
|
||||||||| || || |||||||| |||||||| ||||| ||||| || | || |||||||||||||||||||||||||| ||| |||| |
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| T |
30620974 |
tatgcagaatagatcgtatgcatcggtgaagaagcccattccagctatgacaattgctgtgaaatggtaccattgtgttttcgctacatc |
30621063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 9700035 - 9700111
Alignment:
| Q |
161 |
atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgt |
237 |
Q |
| |
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| T |
9700035 |
atgcagaacagatcataggcatcagtgaagaatcccatgccagcaattactatagctgttacatggtaccattgtgt |
9700111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16175299 - 16175340
Alignment:
| Q |
1 |
cattttgtccccaagccaaccaaagaaaagttggcctgctag |
42 |
Q |
| |
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||||||||||||||||||||||||||| | |||||||||||| |
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| T |
16175299 |
cattttgtccccaagccaaccaaagaataattggcctgctag |
16175340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33115198 - 33115133
Alignment:
| Q |
1 |
cattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatt |
66 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| || | |||| || |||||||||||| |
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|
| T |
33115198 |
cattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctccactgaaagcaacaccatt |
33115133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 16183903 - 16183860
Alignment:
| Q |
161 |
atgcagaaaaggtcatatgcatctgtgaagaatcccataccagc |
204 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
16183903 |
atgcagaaaagatcatatgcatcagtgaagaatcccattccagc |
16183860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 269
Target Start/End: Original strand, 16175459 - 16175567
Alignment:
| Q |
161 |
atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagtta |
260 |
Q |
| |
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||||||||||| ||||| ||||| |||||||| ||||| ||||| || | || | |||||||||||| ||||||| || || |||| || ||| ||| |
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| T |
16175459 |
atgcagaaaagatcataagcatcagtgaagaaacccattccagctatcacaattgtagtgaaatggtacaattgtgtctttgccacatctagtgcattta |
16175558 |
T |
|
| Q |
261 |
gaactccta |
269 |
Q |
| |
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||||||||| |
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| T |
16175559 |
gaactccta |
16175567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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