View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_13 (Length: 555)
Name: NF1166_low_13
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 30 - 402
Target Start/End: Original strand, 41251099 - 41251471
Alignment:
| Q |
30 |
atactaaggataatactttgtttttaacgataagcataatcttttgttatgatactatactagagtcatgtgaaaatcattgctggctctatacattttt |
129 |
Q |
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| T |
41251099 |
atactaaggataatactttgtttttgacgataagcataatattttgttatgatactatactagagtcatgtgaaaatcattgctggctctatacattttt |
41251198 |
T |
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| Q |
130 |
ccttttatacgcattttatagttagatcgaatatcttgaaaagaaaacacattaattattagttgctagctttacaactatatttcctataaagttttat |
229 |
Q |
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| T |
41251199 |
ccttttatacgcattttatagttagatcgaatatcttgaaaagaaaacacattaattattagttgctagctttacaactatatttcctataaagttttat |
41251298 |
T |
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| Q |
230 |
aacnnnnnnnngttcttgtttgatgaagtgaaatatgtatcttaccagaaattgtgtgtgcttcttgtgaagataggatagatcacatgtatatggacat |
329 |
Q |
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| T |
41251299 |
aacttttttttgttcttgtttgatgaagtgaaatatgtatcttaccagaaattgtgtgtgcttcttgtgaagataggatagatcacatgtatatggacat |
41251398 |
T |
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| Q |
330 |
attaataatattaaaatacttttctgttccattccatatgggcctcatggtttctcacgtaagaataatgtga |
402 |
Q |
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| T |
41251399 |
attaataatattaaaatacttttctgttccattccatatgggcctcatggtttctcacgtaagaataatgtga |
41251471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 478 - 524
Target Start/End: Original strand, 41251543 - 41251589
Alignment:
| Q |
478 |
ttattattgagtcatatatgaccgcccacgcttttgtgagttgtaat |
524 |
Q |
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| T |
41251543 |
ttattattgggtcatatatgaccgcccacgcttttgtgagttgtaat |
41251589 |
T |
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