View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_14 (Length: 549)
Name: NF1166_low_14
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 239 - 549
Target Start/End: Complemental strand, 781208 - 780898
Alignment:
| Q |
239 |
atattaatgtttgtttcaagccccactcagtcctgaaatcattaatagggtgggaatgcccataagcaaaggaaagcacaaaaatggaacaaccaagaaa |
338 |
Q |
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| T |
781208 |
atattaatgtttgtttcaagccccactcagtcctgaaatcattaatagggtgggaatgcccataagcaaaggaaagcacaaaaatggaacaaccaagaaa |
781109 |
T |
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| Q |
339 |
taaaaatggtagtggagaataaactgttgaagccctaaggcacggttaatggttgatataggaaagctttgattgatatatgacatttgatgattttggt |
438 |
Q |
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| T |
781108 |
taaaaatggtagtggagaataaactattgaagccctaaggcacggttaatggttgatataggaaagctttgattgatatatgacatttgatgattttggt |
781009 |
T |
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| Q |
439 |
cctttatcatgaagaatggattttatgatttttaaagtgagtgcactttagagtgctccaaattcaatgcctctttcataagtcccatgttctactcaaa |
538 |
Q |
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| T |
781008 |
cctttatcatgaagaatggattttatgatttttaaagtgagtgcactttagagtgctccaaattcaatgcctctttcataagtcccatgttatactcaaa |
780909 |
T |
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| Q |
539 |
aagctccttac |
549 |
Q |
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| T |
780908 |
aagctccttac |
780898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 781399 - 781255
Alignment:
| Q |
97 |
aacctacaccagaacatatcaaatttctccgtatcattttaccatctaaattatacactctttttaagcatgagttgtacacttaactttacaacacatt |
196 |
Q |
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| T |
781399 |
aacctacaccgcaacatatcaaatttctccgtatcattttaccatctaaattatacactctttttaagcatgagttgtacacttaactttacaacacatt |
781300 |
T |
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| Q |
197 |
tatttttatcttttactgatttttaggatgaaatttggtcctata |
241 |
Q |
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| T |
781299 |
tatttttatcttttactgatttttaggatgaaatttggtcatata |
781255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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