View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_16 (Length: 532)
Name: NF1166_low_16
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 21181077 - 21181599
Alignment:
| Q |
1 |
cagaaaatttgtaatgcttaacggatcatatgagttacgttatgactcgagttagttgcaacttgaactagttttacttcttacctttcctcctttgctt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181077 |
cagaaaattggtaatgcttaacggatcatatgagttacgttatgactcgagttagttgcaacttgaactagttttacttcttacctttcctcctttgctt |
21181176 |
T |
|
| Q |
101 |
tctagtccagtaaacaaataaaccaatcagtataagcaatattagaaatgagatcaaagtagcaattagaattagattcctcttcctgttttcatgtctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181177 |
tctagtccagtaaacaaataaaccaatcagtataagcaatattagaaatgagatcaaagtagcaattagaattagattcctcttcctgttttcatgtctt |
21181276 |
T |
|
| Q |
201 |
ccaactgcagtcgttacaataggttctgcaaaggagacttgtcagttagaaaaatactaccatttattccgaagactgcatttagtttggtgtccataac |
300 |
Q |
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||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181277 |
ccaactgcagtcgtttcattaggttctgcaaaggatacttgtcagttagaaaaatacttccatttattccgaagactgcatttagtttggtgtccataac |
21181376 |
T |
|
| Q |
301 |
gctactgcgaaaacataaattggagagattttattttatttgtcactaatttcggctgctaa----nnnnnnnctagtcctatattccttcaaatgatat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21181377 |
gctactgcgaaaacataaattggagagattttattttattcgtcactaatttcggctgctaattttaagttttctagtcctatattccttcaaatgatat |
21181476 |
T |
|
| Q |
397 |
gaaaaagaaaaggaaagataaagtaggttccttcaacttacttgggggaagcaagtctgagccagcaagtctgagataaaaatttggtttattattatta |
496 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
21181477 |
aaaaaagaaaaggaaaggtaaagtaggttccttcaacttacttgggggaagcaagtccgagccagcaagtctgagataaaaatttggt---ttattatta |
21181573 |
T |
|
| Q |
497 |
ttaccgtcttgaatatcagttgagat |
522 |
Q |
| |
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|||| ||||||||| ||||||||||| |
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| T |
21181574 |
ttacggtcttgaatttcagttgagat |
21181599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 23180658 - 23180525
Alignment:
| Q |
76 |
acttcttacctttcctcctttgctttctagtccagtaaacaaataaaccaatcagtataagcaatattagaaatgagatcaaagtagcaattagaattag |
175 |
Q |
| |
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|||||||||||| || |||||||||||||||| ||||||||||| | || ||||| ||| |||| |||||||||||||||| || |||||| || ||| |
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| T |
23180658 |
acttcttaccttccccactttgctttctagtccggtaaacaaataggcaaaccagtacaagaaatagtagaaatgagatcaaaataacaattacaagtag |
23180559 |
T |
|
| Q |
176 |
attcctcttcctgttttcatgtcttccaactgca |
209 |
Q |
| |
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||||||||||| |||| |||||||||||| |||| |
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| T |
23180558 |
attcctcttcccgtttccatgtcttccaattgca |
23180525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 23188842 - 23188710
Alignment:
| Q |
77 |
cttcttacctttcctcctttgctttctagtccagtaaacaaataaaccaatcagtataagcaatattagaaatgagatcaaagtagcaattagaattaga |
176 |
Q |
| |
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||||||||||| || |||||||||||||| | ||||||||||| | || ||||| ||| |||| |||||||||||||||| || |||||| || |||| |
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| T |
23188842 |
cttcttaccttccccactttgctttctagttcggtaaacaaataggcaaagcagtaaaagaaatagtagaaatgagatcaaaataacaattataagtaga |
23188743 |
T |
|
| Q |
177 |
ttcctcttcctgttttcatgtcttccaactgca |
209 |
Q |
| |
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|||||||||| |||| | |||||||||| |||| |
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|
| T |
23188742 |
ttcctcttcccgtttccttgtcttccaattgca |
23188710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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