View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_17 (Length: 484)

Name: NF1166_low_17
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_17
NF1166_low_17
[»] chr3 (11 HSPs)
chr3 (29-479)||(24112077-24112525)
chr3 (98-270)||(4244090-4244262)
chr3 (130-280)||(8109381-8109531)
chr3 (212-275)||(19264274-19264338)
chr3 (100-174)||(4514450-4514524)
chr3 (150-273)||(4252642-4252766)
chr3 (158-204)||(15647410-15647455)
chr3 (134-172)||(17034749-17034787)
chr3 (29-125)||(5699832-5699931)
chr3 (157-193)||(17239379-17239415)
chr3 (157-193)||(46350303-46350339)
[»] chr8 (10 HSPs)
chr8 (39-280)||(28801017-28801260)
chr8 (63-271)||(20084923-20085135)
chr8 (43-275)||(29771899-29772132)
chr8 (41-275)||(29757747-29757983)
chr8 (130-172)||(7321711-7321753)
chr8 (157-193)||(17526188-17526224)
chr8 (142-193)||(18679473-18679525)
chr8 (142-193)||(18718662-18718714)
chr8 (134-178)||(19007968-19008012)
chr8 (210-242)||(30213938-30213970)
[»] chr1 (13 HSPs)
chr1 (36-275)||(17088816-17089058)
chr1 (92-275)||(21721371-21721554)
chr1 (29-142)||(43282636-43282750)
chr1 (212-275)||(14969044-14969108)
chr1 (130-221)||(19965554-19965644)
chr1 (212-275)||(23486222-23486285)
chr1 (100-163)||(14580916-14580980)
chr1 (223-275)||(30497605-30497657)
chr1 (138-275)||(43282937-43283077)
chr1 (212-275)||(16534038-16534103)
chr1 (234-275)||(19965695-19965737)
chr1 (107-175)||(31584588-31584656)
chr1 (212-275)||(15440379-15440443)
[»] scaffold0329 (1 HSPs)
scaffold0329 (31-275)||(3984-4231)
[»] chr4 (7 HSPs)
chr4 (41-204)||(20245115-20245276)
chr4 (211-275)||(20243614-20243679)
chr4 (29-273)||(12190794-12191029)
chr4 (134-175)||(16405166-16405207)
chr4 (211-275)||(12235887-12235953)
chr4 (134-187)||(4746543-4746596)
chr4 (157-193)||(54679588-54679624)
[»] chr7 (9 HSPs)
chr7 (128-275)||(8259045-8259193)
chr7 (34-77)||(4450828-4450871)
chr7 (106-174)||(7561251-7561319)
chr7 (134-175)||(10647074-10647115)
chr7 (223-273)||(23800010-23800061)
chr7 (211-275)||(5075751-5075816)
chr7 (34-75)||(20094923-20094964)
chr7 (105-152)||(27707584-27707631)
chr7 (157-193)||(28622818-28622854)
[»] chr6 (6 HSPs)
chr6 (136-275)||(6561275-6561414)
chr6 (144-240)||(29031694-29031789)
chr6 (212-272)||(15586259-15586320)
chr6 (134-175)||(17291327-17291368)
chr6 (239-275)||(11130525-11130561)
chr6 (243-275)||(21946555-21946587)
[»] scaffold0217 (1 HSPs)
scaffold0217 (106-192)||(7154-7240)
[»] chr2 (8 HSPs)
chr2 (100-174)||(23959186-23959260)
chr2 (212-280)||(27760766-27760835)
chr2 (48-175)||(19878268-19878398)
chr2 (130-177)||(22268457-22268504)
chr2 (212-261)||(24109670-24109720)
chr2 (212-281)||(24109859-24109929)
chr2 (212-273)||(26704219-26704281)
chr2 (243-275)||(22268358-22268390)
[»] chr5 (8 HSPs)
chr5 (130-175)||(17338360-17338405)
chr5 (106-191)||(20689844-20689928)
chr5 (105-175)||(12860078-12860148)
chr5 (134-241)||(25936508-25936614)
chr5 (212-275)||(20689776-20689840)
chr5 (223-275)||(36740719-36740773)
chr5 (178-275)||(19642349-19642447)
chr5 (216-273)||(22185628-22185687)
[»] scaffold0040 (1 HSPs)
scaffold0040 (212-271)||(8195-8256)
[»] scaffold0804 (1 HSPs)
scaffold0804 (100-163)||(633-697)
[»] scaffold0010 (1 HSPs)
scaffold0010 (212-275)||(135747-135811)
[»] scaffold0146 (1 HSPs)
scaffold0146 (157-193)||(14784-14820)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 29 - 479
Target Start/End: Complemental strand, 24112525 - 24112077
Alignment:
Q  29 acgtatctcatttccttctctatataaggagctaaagacttgaagaaataataagactgcagtttttacaagtgctcttactctgtcaaattcaaaaaac 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24112525 acgtatctcatttccttctctatataaggagctaaagacttgaagaaataataagactgcagtttttacaagtgctcttactctgtcaaattcaaaaaac 24112426  T
Q  129 acataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgta 228  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  24112425 aca--aacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaagagtctgactttgtattgcaatttcttacacctctaattgta 24112328  T
Q  229 tatctagtgtaaaccaaacaaacttttatttgattaagttagattgtcaaaataaaagttgggggaaagttatatggaatccatatgttcctccctctaa 328  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24112327 tatctagtgtaaaccaaacaaacttttatttgattgagttagattgtcaaaatacaagttgggggaaagttatatggaatccatatgttcctccctctaa 24112228  T
Q  329 attccttttggtttggagattattccacaacagactgccaactgatgagaacttgctatctagaggtctatacttcccatctgtctgtaacttgtgttgt 428  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24112227 attccttttgatttggagattattccaccacagactgccaactgatgagaacttgctatctagaggtctatacttcccatctgtctgtaacttgtgttgt 24112128  T
Q  429 aaggaacctgaaacatctaagcatctannnnnnngctgcacctttgcttct 479  Q
    |||||||||||||||||||||||||||       |||||||||||||||||    
T  24112127 aaggaacctgaaacatctaagcatctattttttggctgcacctttgcttct 24112077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 4244262 - 4244090
Alignment:
Q  98 aagtgctcttactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactt 197  Q
    |||||| | ||||||| |||||||||||  | |||||||||||||||||||||||| | |||  |||||||||||||  |||||||||||||||| |||     
T  4244262 aagtgcccctactctgccaaattcaaaag-cgcataaacacttaagaatttcttacgaagtttttatcttagaaattataaagtcttaaaagtcttactc 4244164  T
Q  198 tgttttgcaatatcttacacctctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttag 270  Q
    | ||||| |||   |||||||||| |||||||||| ||||| ||| |||||||  |||||||||||||||||||    
T  4244163 tattttgtaattgtttacacctctgattgtatatcaagtgtaaaaacaaacaacattttatttgattaagttag 4244090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 8109531 - 8109381
Alignment:
Q  130 cataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtat 229  Q
    |||||||| |||||||| |||||| | ||||||||||| ||||||| || ||||||| ||||| | | || |||| |||   |||||||||| ||| |||    
T  8109531 cataaacagttaagaatctcttactaagttcatatcttggaaattctaa-gtcttaagagtcttattctgctttgtaattgattacacctctgattctat 8109433  T
Q  230 atctagtgtaaa-ccaaacaaacttttatttgattaagttagattgtcaaaa 280  Q
    ||| |||||||| |||||||| ||||||||||||||| ||||||||| ||||    
T  8109432 atcaagtgtaaaaccaaacaatcttttatttgattaatttagattgtaaaaa 8109381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 19264338 - 19264274
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaac-caaacaaacttttatttgattaagttagattgt 275  Q
    |||||||||| |||||||||  ||||||||  ||||||| |||||||||||||||||||||||||    
T  19264338 ttacacctctgattgtatattaagtgtaaaatcaaacaatcttttatttgattaagttagattgt 19264274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 4514524 - 4514450
Alignment:
Q  100 gtgctcttactctgtcaaattcaaaaaacacata-aacacttaagaatttcttaccaggttcatatcttagaaatt 174  Q
    |||| |||||||||| ||||||||||  |||||| |||||||||||||||||||| | |||||||| |||||||||    
T  4514524 gtgcccttactctgttaaattcaaaag-cacatagaacacttaagaatttcttactaagttcatatgttagaaatt 4514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 4252766 - 4252642
Alignment:
Q  150 ttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctagtgtaaac-caaaca 248  Q
    |||||| ||| || |||||||||||| |||||||||| ||||| ||| | ||||  |||   |||||||| |||||||| | | | ||||||  ||||||    
T  4252766 ttaccaagtttatttcttagaaattcaaaagtcttaagagtcttactctattttttaattgtttacacctataattgtaaaacaaatgtaaaaacaaaca 4252667  T
Q  249 aacttttatttgattaagttagatt 273  Q
    | ||||||||| |||||||||||||    
T  4252666 atcttttatttcattaagttagatt 4252642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 15647455 - 15647410
Alignment:
Q  158 ttcatatcttagaaattccaaagtcttaaaagtctgactttgttttg 204  Q
    |||||||||||||||||| |||||||||| ||||||| |||||||||    
T  15647455 ttcatatcttagaaattctaaagtcttaagagtctga-tttgttttg 15647410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 17034749 - 17034787
Alignment:
Q  134 aacacttaagaatttcttaccaggttcatatcttagaaa 172  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  17034749 aacacttaagaatttcttactaagttcatatcttagaaa 17034787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 5699832 - 5699931
Alignment:
Q  29 acgtatctcatttccttctctatataaggagctaaagacttgaagaa-ataataaga--ctgcagtttttacaagtgctcttactctgtcaaattcaaaa 125  Q
    |||| ||||| ||||||| |||||||| ||| | ||||||||||||| | || ||||  ||| ||||||||||| | | |||||||| ||||||||||||    
T  5699832 acgtctctcaattccttcactatataatgagttgaagacttgaagaacacaacaagactctgtagtttttacaattacccttactctatcaaattcaaaa 5699931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 17239379 - 17239415
Alignment:
Q  157 gttcatatcttagaaattccaaagtcttaaaagtctg 193  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  17239379 gttcatatcttagaaattctaaagtcttaagagtctg 17239415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 46350303 - 46350339
Alignment:
Q  157 gttcatatcttagaaattccaaagtcttaaaagtctg 193  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  46350303 gttcatatcttagaaattctaaagtcttaagagtctg 46350339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 39 - 280
Target Start/End: Original strand, 28801017 - 28801260
Alignment:
Q  39 tttccttctctatataaggagctaaagacttgaagaaataataaga---ctgcagtttttacaagtgctcttactctgtcaaattcaaaaaacacataaa 135  Q
    ||||| || |||| ||||||||| |||||||||||||||||  | |   |||||||||| |||||||| |||||||||||||||||||||  | | ||||    
T  28801017 tttccatccctatgtaaggagctgaagacttgaagaaataaacaaaactctgcagttttaacaagtgcccttactctgtcaaattcaaaag-cgcgtaaa 28801115  T
Q  136 cacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctag 235  Q
     |||| |||||||||||||| |||||||||||| |||||| |||||||||| | ||| ||||||||||| ||| ||||||||| ||||||||||||  ||    
T  28801116 tacttgagaatttcttaccaagttcatatcttataaattctaaagtcttaagaatcttactttgttttgtaatttcttacacccctaattgtatatgaag 28801215  T
Q  236 tgt-aaaccaaacaaacttttatttgattaagttagattgtcaaaa 280  Q
    ||| ||||||||||| | ||||||||||||||||| ||||| ||||    
T  28801216 tgtaaaaccaaacaatc-tttatttgattaagttaaattgtaaaaa 28801260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 63 - 271
Target Start/End: Complemental strand, 20085135 - 20084923
Alignment:
Q  63 aagacttgaagaaat-aataagact--gcagtttttacaagtgctcttactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggtt 159  Q
    |||||||||| |||| |||||||||  | |||||||||||||||  ||| | ||||||||||||||||  |||||||| ||||||||||||||||| |||    
T  20085135 aagacttgaaaaaatcaataagactctgtagtttttacaagtgccattaatatgtcaaattcaaaaaag-cataaacatttaagaatttcttaccaagtt 20085037  T
Q  160 catatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatctt-acacctctaattgtatatctagtgt--aaaccaaacaaactttta 256  Q
     ||||||||||||||  |||||||||  ||||| ||| ||||||| | | | || |||||| |  ||||||||| |||||  ||| ||||||| ||||||    
T  20085036 tatatcttagaaattataaagtcttaggagtctaactgtgttttgtattttgttcacacct-ttgttgtatatcaagtgtaaaaatcaaacaacctttta 20084938  T
Q  257 tttgattaagttaga 271  Q
    |||||||||||||||    
T  20084937 tttgattaagttaga 20084923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 275
Target Start/End: Original strand, 29771899 - 29772132
Alignment:
Q  43 cttctctatataaggagctaaagacttgaagaa-ataataagactg--cagtttttacaagtgctcttactctgtcaaattcaaaaaacacataaacact 139  Q
    ||||||||||||||||| | ||||||||||||| | || ||||||   || |||| ||  |||| |||||||||||||||| ||||  | | ||||||||    
T  29771899 cttctctatataaggagatgaagacttgaagaacacaacaagactcttcaattttaacttgtgc-cttactctgtcaaatttaaaag-cgcgtaaacact 29771996  T
Q  140 taagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctagtgt- 238  Q
    ||||||| | |||| | |||||||||||||||||| | ||||||| | |||||  || | ||||| |||   ||||| |||| |  ||||||| |||||     
T  29771997 taagaatgttttactaagttcatatcttagaaatt-ctaagtctttagagtcttgctctattttgtaattgattacatctctgacagtatatcaagtgta 29772095  T
Q  239 aaaccaaacaaacttttatttgattaagttagattgt 275  Q
    |||||||| || ||||||||||||| |||||||||||    
T  29772096 aaaccaaataatcttttatttgattgagttagattgt 29772132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 275
Target Start/End: Original strand, 29757747 - 29757983
Alignment:
Q  41 tccttctctatataaggagctaaagacttgaagaa-ataataagactg--cagtttttacaagtgctcttactctgtcaaattcaaaaaacacataaaca 137  Q
    ||||||||||||||||||| | ||||||||||||| | || ||||||   ||  ||| ||  |||| |||||||| ||||||| ||||  |||||||| |    
T  29757747 tccttctctatataaggagatcaagacttgaagaacacaacaagactcttcaactttaacttgtgcccttactctatcaaatttaaaag-cacataaata 29757845  T
Q  138 cttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctagtg 237  Q
    |||||   ||| |||| | |||  |||||||||||||  || ||||| |||||||  || | ||||| |||   ||||||||||||||| ||||| ||||    
T  29757846 cttaatttttttttactaagtttgtatcttagaaattataa-gtctttaaagtctttctctattttgtaattgattacacctctaattgaatatcaagtg 29757944  T
Q  238 t-aaaccaaacaaacttttatttgattaagttagattgt 275  Q
    | |||||||| ||  |||||| |||||||||||||||||    
T  29757945 taaaaccaaataatattttatctgattaagttagattgt 29757983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 7321711 - 7321753
Alignment:
Q  130 cataaacacttaagaatttcttaccaggttcatatcttagaaa 172  Q
    |||||||||||||||||||||||| | ||||| ||||||||||    
T  7321711 cataaacacttaagaatttcttactaagttcagatcttagaaa 7321753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 17526188 - 17526224
Alignment:
Q  157 gttcatatcttagaaattccaaagtcttaaaagtctg 193  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  17526188 gttcatatcttagaaattctaaagtcttaagagtctg 17526224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 18679525 - 18679473
Alignment:
Q  142 agaatttcttacca-ggttcatatcttagaaattccaaagtcttaaaagtctg 193  Q
    ||||||||||| || |||||||||||||||||||| | |||||||| ||||||    
T  18679525 agaatttcttatcaaggttcatatcttagaaattctagagtcttaagagtctg 18679473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 18718714 - 18718662
Alignment:
Q  142 agaatttcttacca-ggttcatatcttagaaattccaaagtcttaaaagtctg 193  Q
    ||||||||||| || |||||||||||||||||||| | |||||||| ||||||    
T  18718714 agaatttcttatcaaggttcatatcttagaaattctagagtcttaagagtctg 18718662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 19008012 - 19007968
Alignment:
Q  134 aacacttaagaatttcttaccaggttcatatcttagaaattccaa 178  Q
    ||||| |||||||||||||| | |||||||||||| |||||||||    
T  19008012 aacacataagaatttcttactaagttcatatcttataaattccaa 19007968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 30213970 - 30213938
Alignment:
Q  210 tcttacacctctaattgtatatctagtgtaaac 242  Q
    ||||||||||||||||||||||| |||||||||    
T  30213970 tcttacacctctaattgtatatcaagtgtaaac 30213938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 36 - 275
Target Start/End: Original strand, 17088816 - 17089058
Alignment:
Q  36 tcatttccttctctatataaggagctaaagacttgaagaaataa---taagactgcagtttttacaagtgctcttactctgtcaaattcaaaaaacacat 132  Q
    ||||||||||| |||||||||||| | ||||||||||||| |||   | ||  || ||||||||||||||| |||||||||||||||||||||    |||    
T  17088816 tcatttccttccctatataaggagatgaagacttgaagaagtaaacatgagtttgtagtttttacaagtgcccttactctgtcaaattcaaaagtg-cat 17088914  T
Q  133 aaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatc 232  Q
    |||||||||||||||| |||||| |||||||||||| |||||| |||||||||| ||||| ||| | ||||| |||  ||||||| ||| ||||||||||    
T  17088915 aaacacttaagaatttattaccaagttcatatcttaaaaattctaaagtcttaatagtcttactctattttgtaattgcttacacatctgattgtatatc 17089014  T
Q  233 tagtgt-aaaccaaacaaacttttatttgattaagttagattgt 275  Q
     ||| | |||||||| ||  ||||||||||||||||||||||||    
T  17089015 aagtttaaaaccaaaaaatattttatttgattaagttagattgt 17089058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 92 - 275
Target Start/End: Original strand, 21721371 - 21721554
Alignment:
Q  92 ttttacaagtgctcttactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtc 191  Q
    |||||| ||||| |||||||| ||||||||||||  | ||||||||||| | ||||| |||||| |||||||||||| |||||| |||||||||| ||||    
T  21721371 ttttactagtgcccttactctatcaaattcaaaag-cgcataaacactttataatttattaccaagttcatatcttaaaaattctaaagtcttaagagtc 21721469  T
Q  192 tgactttgttttgcaatatcttacacctctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttagattgt 275  Q
    | ||| |||||||||||   ||||||||||||||||||||| ||||| |||||||| ||  | | ||||||||||||||||||||    
T  21721470 ttactctgttttgcaattgtttacacctctaattgtatatcaagtgtaaaaccaaataatttgtcatttgattaagttagattgt 21721554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 43282636 - 43282750
Alignment:
Q  29 acgtatctcatttccttctctatataaggagctaaagacttgaagaaataataagact--gcagtttttacaagtgctcttactctgtcaaattcaaaaa 126  Q
    |||| ||||||||||||  |||||||||||||| ||||||| |||||  |||||||||  ||||||||||||||||| |||||||| |||||||| ||||    
T  43282636 acgtctctcatttcctttcctatataaggagctgaagacttaaagaataaataagactctgcagtttttacaagtgcccttactctatcaaattc-aaaa 43282734  T
Q  127 acacataaacacttaa 142  Q
     | |||||||||||||    
T  43282735 gcgcataaacacttaa 43282750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 14969044 - 14969108
Alignment:
Q  212 ttacacctctaattgtatatctagtgt-aaaccaaacaaacttttatttgattaagttagattgt 275  Q
    |||||||| | |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  14969044 ttacacctttgattgtatatcaagtgtgaaaccaaacaatcttttatttgattaagttagattgt 14969108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 19965554 - 19965644
Alignment:
Q  130 cataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctct 221  Q
    ||||||||||| | |||||||||| | ||||||||||||||||||| |||||||| | ||||| ||| ||||||| |||| || ||||||||    
T  19965554 cataaacacttcataatttcttactaagttcatatcttagaaattctaaagtctt-agagtcttactctgttttgtaatagctgacacctct 19965644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 23486285 - 23486222
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaaccaaacaaacttttatttgattaagttagattgt 275  Q
    ||||||||||||||||||||  |||||||| ||||||| |||||||||||| |||||| |||||    
T  23486285 ttacacctctaattgtatattaagtgtaaatcaaacaatcttttatttgataaagttatattgt 23486222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 14580916 - 14580980
Alignment:
Q  100 gtgctcttactctgtcaaattcaaaaaa-cacataaacacttaagaatttcttaccaggttcata 163  Q
    |||| |||||||||||||||||||||   || | ||||||||||||||||||||||| |||||||    
T  14580916 gtgcccttactctgtcaaattcaaaagcgcataaaaacacttaagaatttcttaccaagttcata 14580980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 30497657 - 30497605
Alignment:
Q  223 attgtatatctagtgtaaaccaaacaaacttttatttgattaagttagattgt 275  Q
    |||||||| | ||||||||||||| |  |||||||||||||||||||||||||    
T  30497657 attgtataacaagtgtaaaccaaatattcttttatttgattaagttagattgt 30497605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 275
Target Start/End: Original strand, 43282937 - 43283077
Alignment:
Q  138 cttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaa-agtctgact-ttgttttgcaatatcttacacctctaattgtatatctag 235  Q
    ||||| ||||| |||||| ||| ||||||||||||||| ||||||||||| ||| | ||| |  ||||  |||   ||| || ||| |||||||||  ||    
T  43282937 cttaataattttttaccatgtttatatcttagaaattctaaagtcttaaagagtgttactatatttttataattgtttatacatctgattgtatataaag 43283036  T
Q  236 tgt-aaaccaaacaaacttttatttgattaagttagattgt 275  Q
    ||| ||||||||||| |||||||||||| ||||||||||||    
T  43283037 tgtaaaaccaaacaatcttttatttgatcaagttagattgt 43283077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 16534103 - 16534038
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaacca--aacaaacttttatttgattaagttagattgt 275  Q
    |||||||||| |||||||||| |||||||| ||  || ||  ||||||||||||||||||||||||    
T  16534103 ttacacctctgattgtatatcaagtgtaaaacacaaataattttttatttgattaagttagattgt 16534038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 19965695 - 19965737
Alignment:
Q  234 agtgtaaa-ccaaacaaacttttatttgattaagttagattgt 275  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  19965695 agtgtaaatccaaacaatcttttatttgattaagttagattgt 19965737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 31584588 - 31584656
Alignment:
Q  107 tactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatc-ttagaaattc 175  Q
    |||||| ||||||||||||  | ||||||||||||||||||| |||| | ||||||||| ||||||||||    
T  31584588 tactctatcaaattcaaaag-cgcataaacacttaagaatttattactaagttcatatctttagaaattc 31584656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 15440443 - 15440379
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaacc-aaacaaacttttatttgattaagttagattgt 275  Q
    |||||||| | |||||||||| |||||||| | ||||||  |||||||||||| |||||||||||    
T  15440443 ttacacctatgattgtatatcaagtgtaaaactaaacaattttttatttgatttagttagattgt 15440379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 31 - 275
Target Start/End: Complemental strand, 4231 - 3984
Alignment:
Q  31 gtatctcatttccttctctatataaggagctaaagacttgaagaaat-aataagact--gcagtttttacaagtgctcttactctgtcaaattcaaaaaa 127  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||  ||  ||||||||||||   |||||||  |||||| |||||     
T  4231 gtatcacattttcttctctatataaggagataaagacttgaagaaattaataagactctgctatttttacaagtgtcattactcttccaaattgaaaaa- 4133  T
Q  128 cacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgt 227  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||| ||| | ||| | | |   |||||||||| |||||    
T  4132 cgcataaacacttaagaatttcttaccaagttcatatcttagaaattctaaagtctttagagtcttactctatttggtacttgtttacacctctgattgt 4033  T
Q  228 atatctagtgt-aaaccaaacaaacttttatttgattaagttagattgt 275  Q
    ||||| ||| | |||||||||||   ||||||| || ||||||||||||    
T  4032 atatcaagtataaaaccaaacaattgtttatttaataaagttagattgt 3984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 20245276 - 20245115
Alignment:
Q  41 tccttctctatataaggagctaaagacttgaagaaat-aataagact--gcagtttttacaagtgctcttactctgtcaaattcaaaaaacacataaaca 137  Q
    ||||||| ||||||||||||| || ||||| |||||| ||  |||||  |||||||||||||||| | ||||||| ||||||||||||       |||||    
T  20245276 tccttctttatataaggagctgaaaacttggagaaatcaacgagactctgcagtttttacaagtgtttttactctatcaaattcaaaagc-----aaaca 20245182  T
Q  138 cttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttg 204  Q
    ||||||||||||||| || ||||||||||||||||||| ||||| |||||||||| ||||| |||||    
T  20245181 cttaagaatttcttatcaagttcatatcttagaaattctaaagttttaaaagtcttactttattttg 20245115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 20243679 - 20243614
Alignment:
Q  211 cttacacctctaattgtatatctagtgtaaa-ccaaacaaacttttatttgattaagttagattgt 275  Q
    ||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  20243679 cttacacatctaattgtatatcaagtgtaaaaccaaacaatcttttatttgattaagttagattgt 20243614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 273
Target Start/End: Complemental strand, 12191029 - 12190794
Alignment:
Q  29 acgtatctcatttccttctctatataaggagctaaagacttgaagaaataat-aagact--gcagtttttacaagtgctcttactctgtcaaattcaaaa 125  Q
    |||| ||| |||||||||||||||||||||||| ||||||| ||||||| |  ||||||  ||| | |||||||||    |||||||| |||||| ||||    
T  12191029 acgtctcttatttccttctctatataaggagcttaagacttcaagaaatgagcaagactctgcaatatttacaagtttcattactctgccaaattgaaaa 12190930  T
Q  126 aacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaatt 225  Q
      || |||||||||||||||||||           ||||||||||||||  |||||||||| ||||| ||||||||||| |||   |||||||| | |||    
T  12190929 g-catataaacacttaagaatttc-----------atatcttagaaattttaaagtcttaagagtcttactttgttttgtaattgtttacacctttgatt 12190842  T
Q  226 gtatatctagtgt-aaaccaaacaaacttttatttgattaagttagatt 273  Q
    ||||||  ||||| ||||  ||||| | |||||||||||||| ||||||    
T  12190841 gtatataaagtgtaaaactgaacaatc-tttatttgattaagctagatt 12190794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 16405166 - 16405207
Alignment:
Q  134 aacacttaagaatttcttaccaggttcatatcttagaaattc 175  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  16405166 aacacttaagaatttcttactaggttcatatcttagaaattc 16405207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 12235953 - 12235887
Alignment:
Q  211 cttacacctctaattgtatatctagtgtaaac--caaacaaacttttatttgattaagttagattgt 275  Q
    ||||||||||| |||||||||| ||||||||   || |||| |||||||||||||||||||||||||    
T  12235953 cttacacctctgattgtatatcaagtgtaaattacatacaatcttttatttgattaagttagattgt 12235887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 4746543 - 4746596
Alignment:
Q  134 aacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaa 187  Q
    |||||||||||||||||||| | || |||||||||||||||| | |||||||||    
T  4746543 aacacttaagaatttcttactaagtacatatcttagaaattctatagtcttaaa 4746596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 54679624 - 54679588
Alignment:
Q  157 gttcatatcttagaaattccaaagtcttaaaagtctg 193  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  54679624 gttcatatcttagaaattccagagtcttaagagtctg 54679588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 128 - 275
Target Start/End: Complemental strand, 8259193 - 8259045
Alignment:
Q  128 cacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgt 227  Q
    ||||||||||||||| |||||||||| | |||||| |||||||||||  || ||||||| |||||  || | ||||||| |   | ||||||||||| ||    
T  8259193 cacataaacacttaataatttcttactaagttcatttcttagaaattttaa-gtcttaagagtcttgctctattttgcatttgttcacacctctaatcgt 8259095  T
Q  228 atatctagtgtaaac--caaacaaacttttatttgattaagttagattgt 275  Q
    |||||||||| |||   ||||||| |||||||||||||||||||||||||    
T  8259094 atatctagtgaaaaaatcaaacaatcttttatttgattaagttagattgt 8259045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 4450871 - 4450828
Alignment:
Q  34 tctcatttccttctctatataaggagctaaagacttgaagaaat 77  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  4450871 tctcatttcattctctatataaggagctaaagacttgaagaaat 4450828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 7561251 - 7561319
Alignment:
Q  106 ttactctgtcaaattcaaaaaacacata-aacacttaagaatttcttaccaggttcatatcttagaaatt 174  Q
    ||||| ||||||||||||||  |||||| |||||||||||||||||||| | |||||||||||| |||||    
T  7561251 ttactatgtcaaattcaaaag-cacatagaacacttaagaatttcttactaagttcatatcttaaaaatt 7561319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 10647074 - 10647115
Alignment:
Q  134 aacacttaagaatttcttaccaggttcatatcttagaaattc 175  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  10647074 aacacttaagaatttcttactaagttcatatcttagaaattc 10647115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 23800061 - 23800010
Alignment:
Q  223 attgtatatctagtgtaaa-ccaaacaaacttttatttgattaagttagatt 273  Q
    |||||||||| | |||||| |||||||| |||||||||||||||||||||||    
T  23800061 attgtatatcaaatgtaaaaccaaacaatcttttatttgattaagttagatt 23800010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 5075751 - 5075816
Alignment:
Q  211 cttacacctctaattgtatatctagtgtaaac-caaacaaacttttatttgattaagttagattgt 275  Q
    ||||||||||| ||||||| ||  |||||||  ||||||| |||||||||||| ||||||||||||    
T  5075751 cttacacctctgattgtatttcaggtgtaaaatcaaacaatcttttatttgatcaagttagattgt 5075816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 20094964 - 20094923
Alignment:
Q  34 tctcatttccttctctatataaggagctaaagacttgaagaa 75  Q
    |||||| |||||| |||||||||||||| |||||||||||||    
T  20094964 tctcatatccttccctatataaggagctgaagacttgaagaa 20094923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 27707584 - 27707631
Alignment:
Q  105 cttactctgtcaaattcaaaaaacacata-aacacttaagaatttctta 152  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  27707584 cttactctgtcaaat-caaaaaacgcatagaacacttaagaatttctta 27707631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 28622818 - 28622854
Alignment:
Q  157 gttcatatcttagaaattccaaagtcttaaaagtctg 193  Q
    ||||||||||||||||||| | |||||||||||||||    
T  28622818 gttcatatcttagaaattctagagtcttaaaagtctg 28622854  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 136 - 275
Target Start/End: Original strand, 6561275 - 6561414
Alignment:
Q  136 cacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctag 235  Q
    |||||||||||||||| | | ||| |||| |||||||||| || ||||||| ||||| ||| ||||||| | |   |||||| ||| |||||||||| ||    
T  6561275 cacttaagaatttcttgctaagtttatatgttagaaattctaa-gtcttaagagtcttactctgttttgtatttatttacacttctgattgtatatcaag 6561373  T
Q  236 tgtaaac-caaacaaacttttatttgattaagttagattgt 275  Q
    ||||||  ||||||| |||||||||||||||||||||||||    
T  6561374 tgtaaaatcaaacaatcttttatttgattaagttagattgt 6561414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 29031789 - 29031694
Alignment:
Q  144 aatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctagtgtaa 240  Q
    |||||||||| | ||||||||||||||||||| |||||||||||||| ||  ||||||||| |||   |||||||||| |||||||||| |||||||    
T  29031789 aatttcttactaagttcatatcttagaaattctaaagtcttaaaagtttg-ttttgttttgtaattgtttacacctctgattgtatatcaagtgtaa 29031694  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 15586320 - 15586259
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaac-caaacaaacttttatttgattaagttagat 272  Q
    |||||||| | |||||||||| ||||||||  ||||||| ||||||||||||||||||||||    
T  15586320 ttacacctttgattgtatatcaagtgtaaaatcaaacaaccttttatttgattaagttagat 15586259  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 17291368 - 17291327
Alignment:
Q  134 aacacttaagaatttcttaccaggttcatatcttagaaattc 175  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  17291368 aacacttaagaatttcttactaagttcatatcttagaaattc 17291327  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 11130561 - 11130525
Alignment:
Q  239 aaaccaaacaaacttttatttgattaagttagattgt 275  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  11130561 aaaccaaacaatcttttatttgattaagttagcttgt 11130525  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 21946555 - 21946587
Alignment:
Q  243 caaacaaacttttatttgattaagttagattgt 275  Q
    ||||||| |||||||||||||||||||||||||    
T  21946555 caaacaatcttttatttgattaagttagattgt 21946587  T

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Target: scaffold0217 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 7154 - 7240
Alignment:
Q  106 ttactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtct 192  Q
    ||||||||||||||| ||||| | |||||||||||||||| |||||| ||  ||  |||||||||||||| |||||||||| |||||    
T  7154 ttactctgtcaaatttaaaaatcgcataaacacttaagaagttcttagcaatttactatcttagaaattctaaagtcttaagagtct 7240  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 23959260 - 23959186
Alignment:
Q  100 gtgctcttactctgtcaaattcaaaaaacacata-aacacttaagaatttcttaccaggttcatatcttagaaatt 174  Q
    ||||||||||||| ||||||| |||||||||||| ||||||| |||||||||||| | ||| ||||||||||||||    
T  23959260 gtgctcttactctctcaaatt-aaaaaacacatagaacacttgagaatttcttactaagtttatatcttagaaatt 23959186  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 27760766 - 27760835
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaa-ccaaacaaacttttatttgattaagttagattgtcaaaa 280  Q
    |||||||||| |||||||||| |||||||| |||||||| ||||||| |||||| |||||||||| ||||    
T  27760766 ttacacctcttattgtatatcaagtgtaaaaccaaacaatcttttatatgattaggttagattgtgaaaa 27760835  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 19878268 - 19878398
Alignment:
Q  48 ctatataaggagctaaagacttgaagaaata--ataagact--gcagtttttacaagtgctcttactctgtcaaattcaaaaaacacata-aacacttaa 142  Q
    |||||||||||||| ||||||||||||||||  | ||||||  ||| |||| |   |||| |||||||||||||||||||||  | |||| |||||||||    
T  19878268 ctatataaggagctgaagacttgaagaaatacaaaaagactctgcaattttaatt-gtgcccttactctgtcaaattcaaaag-cgcatagaacacttaa 19878365  T
Q  143 gaatttcttaccaggttcatatcttagaaattc 175  Q
    |||||| |||| | |||||||||||||| ||||    
T  19878366 gaatttattactaagttcatatcttagatattc 19878398  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 22268504 - 22268457
Alignment:
Q  130 cataaacacttaagaatttcttaccaggttcatatcttagaaattcca 177  Q
    ||||||||||||||| |||||||  | |||||||||||||||||||||    
T  22268504 cataaacacttaagagtttcttattaagttcatatcttagaaattcca 22268457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 24109670 - 24109720
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaa-ccaaacaaacttttatttga 261  Q
    |||||||| | |||||||||| |||||||| ||||||||||||||||||||    
T  24109670 ttacacctttgattgtatatcaagtgtaaaaccaaacaaacttttatttga 24109720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 24109859 - 24109929
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaacc-aaacaaacttttatttgattaagttagattgtcaaaat 281  Q
    |||||||||| |||||||||| ||||||||   ||||||  |||||| ||||||||||||||||| |||||    
T  24109859 ttacacctctgattgtatatcaagtgtaaaattaaacaatattttatatgattaagttagattgttaaaat 24109929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 26704281 - 26704219
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaa-ccaaacaaacttttatttgattaagttagatt 273  Q
    |||||| ||| |||||||||| ||| |||| ||||||||  ||||||||||||||||||||||    
T  26704281 ttacacatctgattgtatatcaagtttaaaaccaaacaatattttatttgattaagttagatt 26704219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 22268390 - 22268358
Alignment:
Q  243 caaacaaacttttatttgattaagttagattgt 275  Q
    ||||||| |||||||||||||||||||||||||    
T  22268390 caaacaatcttttatttgattaagttagattgt 22268358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 17338360 - 17338405
Alignment:
Q  130 cataaacacttaagaatttcttaccaggttcatatcttagaaattc 175  Q
    |||||||||||||||||||||||| | |||||||||||||||||||    
T  17338360 cataaacacttaagaatttcttactaagttcatatcttagaaattc 17338405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 20689928 - 20689844
Alignment:
Q  106 ttactctgtcaaattcaaaaaacacataaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtc 191  Q
    ||||||||||||||||||||| | ||||||||||||||||||| ||| || ||| |||| |||||||| | |||||| ||| ||||    
T  20689928 ttactctgtcaaattcaaaaa-cgcataaacacttaagaattttttaacaagttgatatattagaaatactaaagtcataagagtc 20689844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 12860078 - 12860148
Alignment:
Q  105 cttactctgtcaaattcaaaaaacacat-aaacacttaagaatttcttaccaggttcatatcttagaaattc 175  Q
    |||||||||||||||||||||  | ||| ||||||||||||||||||||| | |||||||||||| ||||||    
T  12860078 cttactctgtcaaattcaaaag-cgcattaaacacttaagaatttcttactaagttcatatcttataaattc 12860148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 25936508 - 25936614
Alignment:
Q  134 aacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatct 233  Q
    ||||| |||||||||||||  | ||||||||||||||||||||  |||||||| ||| | | ||  ||||| |||  ||||||||||| ||||||||||     
T  25936508 aacacctaagaatttcttattaagttcatatcttagaaattcc-gagtcttaagagtgttatttcattttgtaattgcttacacctctgattgtatatca 25936606  T
Q  234 agtgtaaa 241  Q
    ||||||||    
T  25936607 agtgtaaa 25936614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 20689840 - 20689776
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaac-caaacaaacttttatttgattaagttagattgt 275  Q
    |||||||| | |||||||||| ||||||||  ||||||| |||||||||||||||||| ||||||    
T  20689840 ttacacctatgattgtatatcaagtgtaaaatcaaacaatcttttatttgattaagtttgattgt 20689776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 36740719 - 36740773
Alignment:
Q  223 attgtatatctagtgtaaa--ccaaacaaacttttatttgattaagttagattgt 275  Q
    |||||||||| ||||||||  |||||||| ||||||||||| |||||||||||||    
T  36740719 attgtatatcaagtgtaaaacccaaacaatcttttatttgactaagttagattgt 36740773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 19642349 - 19642447
Alignment:
Q  178 aagtcttaaaagtctgactttgttttgcaatatcttacacctctaattgtatatctagtgtaaac-caaacaaacttttatttgattaagttagattgt 275  Q
    ||||||||| ||| ||||| | ||||| |||   |||||||| | |||||| ||| ||||||||  |||| || |||||||||||||||||||||||||    
T  19642349 aagtcttaagagtatgactctattttgtaattgattacacctttgattgtaaatcaagtgtaaaatcaaataatcttttatttgattaagttagattgt 19642447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 22185687 - 22185628
Alignment:
Q  216 acctctaattgtatatctagtgtaaac--caaacaaacttttatttgattaagttagatt 273  Q
    |||||| |||||||||| ||||||||   | ||||| |||||||||||||||||||||||    
T  22185687 acctctgattgtatatcaagtgtaaaaatctaacaatcttttatttgattaagttagatt 22185628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 8195 - 8256
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaa--ccaaacaaacttttatttgattaagttaga 271  Q
    |||||||||| |||||||||| ||||||||  |||||||| |||||||||||||| ||||||    
T  8195 ttacacctcttattgtatatcaagtgtaaaagccaaacaatcttttatttgattaggttaga 8256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 633 - 697
Alignment:
Q  100 gtgctcttactctgtcaaattcaaaaaa-cacataaacacttaagaatttcttaccaggttcata 163  Q
    |||| |||||||||||||||||||||   || | ||||||||||||||||||||||| |||||||    
T  633 gtgcccttactctgtcaaattcaaaagcgcataaaaacacttaagaatttcttaccaagttcata 697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 135811 - 135747
Alignment:
Q  212 ttacacctctaattgtatatctagtgtaaacc-aaacaaacttttatttgattaagttagattgt 275  Q
    |||||||||| |||||||||| |||||||| | ||| || ||||||||||||||||||| |||||    
T  135811 ttacacctctgattgtatatcaagtgtaaaactaaataatcttttatttgattaagttaaattgt 135747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 14820 - 14784
Alignment:
Q  157 gttcatatcttagaaattccaaagtcttaaaagtctg 193  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  14820 gttcatatcttagaaattctaaagtcttaagagtctg 14784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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