View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_18 (Length: 476)

Name: NF1166_low_18
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_18
NF1166_low_18
[»] chr8 (22 HSPs)
chr8 (98-383)||(27804844-27805130)
chr8 (232-381)||(6345674-6345822)
chr8 (232-381)||(37948525-37948673)
chr8 (232-381)||(1265483-1265631)
chr8 (233-380)||(3774202-3774347)
chr8 (232-381)||(31126841-31126989)
chr8 (232-381)||(43619620-43619768)
chr8 (273-381)||(10182832-10182939)
chr8 (232-381)||(4267743-4267891)
chr8 (232-381)||(13471242-13471391)
chr8 (233-381)||(253188-253335)
chr8 (233-381)||(662523-662670)
chr8 (233-381)||(848321-848468)
chr8 (242-336)||(10636310-10636404)
chr8 (235-337)||(15266349-15266451)
chr8 (232-381)||(4602999-4603147)
chr8 (231-307)||(11863981-11864057)
chr8 (232-381)||(32907309-32907457)
chr8 (232-380)||(12522773-12522920)
chr8 (284-336)||(5327503-5327555)
chr8 (341-381)||(26720846-26720886)
chr8 (240-300)||(44902728-44902788)
[»] chr4 (17 HSPs)
chr4 (226-381)||(9280302-9280456)
chr4 (232-381)||(34277336-34277485)
chr4 (232-381)||(24574738-24574886)
chr4 (231-381)||(42414128-42414276)
chr4 (232-383)||(7612418-7612568)
chr4 (241-381)||(24319436-24319575)
chr4 (232-381)||(42430380-42430528)
chr4 (248-381)||(23695515-23695637)
chr4 (247-380)||(3757336-3757468)
chr4 (232-381)||(31567723-31567866)
chr4 (269-359)||(47310381-47310469)
chr4 (232-381)||(46251520-46251668)
chr4 (232-381)||(47498427-47498575)
chr4 (242-381)||(47975226-47975364)
chr4 (228-376)||(40436790-40436937)
chr4 (315-381)||(7700661-7700726)
chr4 (269-381)||(8738827-8738928)
[»] chr7 (12 HSPs)
chr7 (232-381)||(1576221-1576369)
chr7 (232-381)||(27392962-27393110)
chr7 (232-381)||(36482233-36482381)
chr7 (242-383)||(8937355-8937495)
chr7 (232-336)||(29987573-29987677)
chr7 (232-381)||(323162-323311)
chr7 (218-381)||(31279729-31279892)
chr7 (232-381)||(36582091-36582234)
chr7 (241-336)||(14242860-14242956)
chr7 (348-380)||(23222885-23222917)
chr7 (250-297)||(23226926-23226974)
chr7 (250-297)||(23236079-23236127)
[»] chr6 (9 HSPs)
chr6 (232-381)||(7607863-7608011)
chr6 (232-381)||(16704945-16705093)
chr6 (242-376)||(10483978-10484107)
chr6 (232-381)||(30395942-30396090)
chr6 (236-336)||(4463776-4463876)
chr6 (232-381)||(21947079-21947227)
chr6 (233-381)||(3900707-3900853)
chr6 (232-336)||(16110641-16110745)
chr6 (230-279)||(31945514-31945563)
[»] chr3 (7 HSPs)
chr3 (227-380)||(37282223-37282375)
chr3 (232-381)||(19636126-19636274)
chr3 (247-381)||(29283358-29283491)
chr3 (241-377)||(25393043-25393168)
chr3 (250-381)||(1030858-1030989)
chr3 (232-382)||(25706671-25706820)
chr3 (248-336)||(27166889-27166977)
[»] chr1 (10 HSPs)
chr1 (232-381)||(41198078-41198226)
chr1 (232-381)||(14462079-14462227)
chr1 (232-381)||(24615165-24615308)
chr1 (235-381)||(35671681-35671826)
chr1 (248-381)||(28655955-28656087)
chr1 (232-381)||(5559762-5559915)
chr1 (241-380)||(11619599-11619732)
chr1 (286-336)||(36851118-36851168)
chr1 (293-335)||(38856216-38856258)
chr1 (248-332)||(534983-535067)
[»] chr5 (12 HSPs)
chr5 (232-383)||(27111041-27111191)
chr5 (226-377)||(35449202-35449352)
chr5 (232-381)||(40044554-40044697)
chr5 (232-381)||(40987717-40987865)
chr5 (232-381)||(1495448-1495596)
chr5 (232-381)||(17342039-17342186)
chr5 (232-381)||(41061621-41061768)
chr5 (241-383)||(33745832-33745972)
chr5 (247-336)||(42715745-42715834)
chr5 (249-381)||(26639796-26639927)
chr5 (242-381)||(4986485-4986623)
chr5 (249-381)||(13555147-13555277)
[»] chr2 (9 HSPs)
chr2 (229-381)||(21351877-21352028)
chr2 (229-383)||(10997612-10997765)
chr2 (223-381)||(42295366-42295523)
chr2 (230-381)||(29772585-29772735)
chr2 (242-381)||(22596730-22596867)
chr2 (247-381)||(16672390-16672518)
chr2 (232-381)||(18511950-18512098)
chr2 (232-379)||(39989200-39989346)
chr2 (247-298)||(19968630-19968681)
[»] scaffold0396 (1 HSPs)
scaffold0396 (232-381)||(846-994)
[»] scaffold0717 (1 HSPs)
scaffold0717 (248-312)||(5955-6019)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 98 - 383
Target Start/End: Original strand, 27804844 - 27805130
Alignment:
Q  98 acatagttattacttagtaagattattattctttgtagacatatgtattttt-gtaagcgtagttttgttgaacggatatgaggtcatttacatgaagat 196  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27804844 acatagttagtacttagtaagattattattctttatagacatatgtatttttagtaagcgtagttttgttgaacggatatgaggtcatttacatgaagat 27804943  T
Q  197 ccgacctcttgtaccacttcgtaagatatagctaagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatc 296  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  27804944 ccgacctcctgtaccacttcgtaagatatagctaagggtgttcacgatgtggcttggatcggttttgaagtaaaatgtcatccgatccaaaataaaaatc 27805043  T
Q  297 acatgcggttcagttcgatttggatgactattttaaaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatcag 383  Q
    ||||||||||| ||||||||||||||||||  |||||||| |||| ||| ||||||||||||| || ||||||||||||||||||||    
T  27805044 acatgcggttcggttcgatttggatgactacattaaaaaaaattcaaatcgatccgatccaaatatttgcggtttaatttggatcag 27805130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 6345822 - 6345674
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| ||||||  ||| || |||||||||||||||||| |||||||| ||||| ||||||||| ||| |||    
T  6345822 gggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattatgtta 6345723  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  ||||||||||||| |||||||||||||||||||||    
T  6345722 aaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggatc 6345674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 37948525 - 37948673
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| ||||||  ||| || |||||||||||||||||| |||||||| ||||| ||||||||| ||| |||    
T  37948525 gggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattatgtta 37948624  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  ||||||||||||| |||||||||||||||||||||    
T  37948625 aaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggatc 37948673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 1265631 - 1265483
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| ||||||  ||| || |||||||||||||||||| |||||||| ||||| ||||||||| ||| |||    
T  1265631 gggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattatgtta 1265532  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| ||  |||  ||||||||||||| |||||||||||||||||||||    
T  1265531 aaaaa-atctgaaccgatccgatccaaatatatgcggtttaatttggatc 1265483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 233 - 380
Target Start/End: Complemental strand, 3774347 - 3774202
Alignment:
Q  233 ggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaa 332  Q
    |||||||||||||||||||||||||||||||| || |||||||| |  ||||||||||||||||||||||  ||| ||||  ||||||||| |||| |||    
T  3774347 ggtgttcacggtgtggtttggatcggttttgaggtaaaatgtcaactgatccaaaataaaaatcacatgcaattcggttcagtttggatgagtattctaa 3774248  T
Q  333 aaaatattcgaattgatccgatccaaacatatgcggtttaatttggat 380  Q
    |||  || ||||  || |||||||||| ||||||||||||||||||||    
T  3774247 aaa--atccgaaccgaaccgatccaaatatatgcggtttaatttggat 3774202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 31126841 - 31126989
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| ||||||  ||| || |||||||||||||||||| |||||||| ||||| ||||||||| ||| |||    
T  31126841 gggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattatgtta 31126940  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| ||  |||  ||||||| ||||| |||||||||||||||||||||    
T  31126941 aaaaa-atctgaaccgatccgacccaaatatatgcggtttaatttggatc 31126989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 43619620 - 43619768
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| ||||||  ||| || |||||||||||||||||| |||||||| ||||| ||||||||| ||| |||    
T  43619620 gggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattatgtta 43619719  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| ||| |||  ||| ||| ||||| |||||||||||||||||||||    
T  43619720 aaaaa-atttgaaccgattcgacccaaatatatgcggtttaatttggatc 43619768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 381
Target Start/End: Original strand, 10182832 - 10182939
Alignment:
Q  273 gtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaattgatccgatccaaacatatgcggttta 372  Q
    ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| |||  || ||||| |||| ||||||||||||    
T  10182832 gtcatccgatccaaaataaaaatcacatgcggttcggttcggtttggatgactattttaaaaaa-atttgaaccgaaccgattcaaatatatgcggttta 10182930  T
Q  373 atttggatc 381  Q
    |||||||||    
T  10182931 atttggatc 10182939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 4267891 - 4267743
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||| ||||||||||| |||||| || |||||||| || ||||||||||||||||||||||||||| ||||  ||||||||| ||||  |    
T  4267891 gggtgttcgcggtgcggtttggatcgattttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcagtttggatgagtattcca 4267792  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
     |||| || ||||  || |||||||||  |||||||||||||||||||||    
T  4267791 gaaaa-atccgaaccgaaccgatccaattatatgcggtttaatttggatc 4267743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 13471391 - 13471242
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatg-tcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttt 330  Q
    |||||||| |||| |||||||||||| |||| |||| |||   ||| || |||||||||||||||||| |||||||| ||||| ||| ||| | ||| ||    
T  13471391 gggtgttcgcggtctggtttggatcgattttaaagtaaaaaactcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttagataattatgtt 13471292  T
Q  331 aaaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    |||||| |||||||  ||||||||||||| |||||||||||||||||||||    
T  13471291 aaaaaa-attcgaaccgatccgatccaaatatatgcggtttaatttggatc 13471242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 381
Target Start/End: Original strand, 253188 - 253335
Alignment:
Q  233 ggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaa 332  Q
    ||||||| |||||||||||| || ||||||||    ||||||||||| ||||||||||||||| ||||||||||| ||| | |||| ||||| ||| |||    
T  253188 ggtgttcccggtgtggtttgaattggttttgagaccaaatgtcatccgatccaaaataaaaataacatgcggttcggtttggtttgaatgacaattctaa 253287  T
Q  333 aaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    || | || | || |||||||||||||||||||||||||  |||||||||    
T  253288 aata-atccaaactgatccgatccaaacatatgcggttatatttggatc 253335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 381
Target Start/End: Complemental strand, 662670 - 662523
Alignment:
Q  233 ggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaa 332  Q
    ||||||| |||||||||||| || ||||||||    ||||||||||| ||||||||||||||| ||||||||||| ||| | |||| ||||| ||| |||    
T  662670 ggtgttcccggtgtggtttgaattggttttgagaccaaatgtcatccgatccaaaataaaaataacatgcggttcggtttggtttgaatgacaattctaa 662571  T
Q  333 aaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    || | || | || |||||||||||||||||||||||||  |||||||||    
T  662570 aata-atccaaactgatccgatccaaacatatgcggttatatttggatc 662523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 381
Target Start/End: Complemental strand, 848468 - 848321
Alignment:
Q  233 ggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaa 332  Q
    ||||||| |||||||||||| || ||||||||    ||||||||||| ||||||||||||||| ||||||||||| ||| | |||| ||||| ||| |||    
T  848468 ggtgttcccggtgtggtttgaattggttttgagaccaaatgtcatccgatccaaaataaaaataacatgcggttcggtttggtttgaatgacaattctaa 848369  T
Q  333 aaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    || | || | || |||||||||||||||||||||||||  |||||||||    
T  848368 aata-atccaaactgatccgatccaaacatatgcggttatatttggatc 848321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 336
Target Start/End: Original strand, 10636310 - 10636404
Alignment:
Q  242 ggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaa 336  Q
    ||||| ||||| |||| |||||| || ||||||||||||||| ||||||||||||||| ||||||  ||||| | |||||||||||| |||||||    
T  10636310 ggtgtagtttgaatcgattttgaggtaaaatgtcatccaatcaaaaataaaaatcacacgcggtttggttcggtgtggatgactattctaaaaaa 10636404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 15266451 - 15266349
Alignment:
Q  235 tgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaa 334  Q
    ||||||||||| || |||||||| |||||| |  ||| ||||||||||  ||||||||||||||||| | | || |||| ||||||||||||||||||||    
T  15266451 tgttcacggtgcgggttggatcgattttgaggcaaaaagtcatccaattgaaaataaaaatcacatgtgatacaattcggtttggatgactattttaaaa 15266352  T
Q  335 aat 337  Q
    |||    
T  15266351 aat 15266349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 4603147 - 4602999
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  ||||||||||||||||||    ||| || | || |||||||||||||||||   ||||||| ||||| ||||||||| ||||  |    
T  4603147 gggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtttggatgattattcaa 4603048  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || |||   ||||||||||||| |||||||||||| ||||||||    
T  4603047 aaaaa-atccgatccgatccgatccaaatatatgcggtttattttggatc 4602999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 11864057 - 11863981
Alignment:
Q  231 agggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttc 307  Q
    ||||||||| ||||| ||||||||| |||||||| || ||||||||  | ||||||||||||||| |||||||||||    
T  11864057 agggtgttcgcggtgcggtttggattggttttgaggtaaaatgtcaatcgatccaaaataaaaattacatgcggttc 11863981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 32907457 - 32907309
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  ||||||||||||||||||    ||| || | || |||||||||||||||||   ||||||| ||||  ||||||||| ||||  |    
T  32907457 gggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcagtttggatgattattaaa 32907358  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || |||   ||||||||||||| |||||||||||| ||||||||    
T  32907357 aaaaa-atccgatccgatccgatccaaatatatgcggtttattttggatc 32907309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 380
Target Start/End: Original strand, 12522773 - 12522920
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||| |||| ||||||  |||| |||||||| ||||||||||||||||| | | | |||  ||||  || |||||||||||||    
T  12522773 gggtgttcgcggtacggtttgaatcgattttgagattaa-tgtcatccgatccaaaataaaaatcataagtgattcgattcggcttagatgactatttta 12522871  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggat 380  Q
    | ||| ||  ||   ||| ||||||||| |||||| |||||||||||||    
T  12522872 ataaaaatctgatccgattcgatccaaatatatgcagtttaatttggat 12522920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 5327503 - 5327555
Alignment:
Q  284 caaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaa 336  Q
    |||||||||||| | ||| | |||||||||||||| |||||||||| ||||||    
T  5327503 caaaataaaaattatatgtgattcagttcgatttgaatgactatttaaaaaaa 5327555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 26720846 - 26720886
Alignment:
Q  341 cgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| |||| |||||||| |||||||||||||||||||||    
T  26720846 cgaatcgatctgatccaaatatatgcggtttaatttggatc 26720886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 44902728 - 44902788
Alignment:
Q  240 acggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacat 300  Q
    |||||||||||||||||| ||||||||  |||| |||| | || |||||| ||||||||||    
T  44902728 acggtgtggtttggatcgattttgaagcaaaatatcattcgattcaaaattaaaatcacat 44902788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 226 - 381
Target Start/End: Complemental strand, 9280456 - 9280302
Alignment:
Q  226 agctaagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgact 325  Q
    ||||| |||||||| ||||  |||||||||||||||||| ||||||  ||| ||||||||||||||||||||| |||||||| ||||| ||||||||| |    
T  9280456 agctaggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccaatccaaaataaaaatcacgtgcggttcggttcggtttggatgatt 9280357  T
Q  326 attttaaaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    || |||||||| || ||||  ||||||||||||| |||||||||||||||||||||    
T  9280356 atgttaaaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggatc 9280302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 34277485 - 34277336
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||| |||||||||||||||||| || |||||||| || ||||||||||||||||||||||||||| ||||| ||||||||| |||||      
T  34277485 gggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttggatgagtatttct 34277386  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||| || |||||||||  |||||| ||||||||||||||    
T  34277385 aaaaaaatacgaatcgaaccgatccaactatatgctgtttaatttggatc 34277336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 24574738 - 24574886
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| ||||||  ||| || || |||||||||||||||||||||||| ||||| ||||||||| ||| |||    
T  24574738 gggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatacaaaataaaaatcacatgcggttcggttcggtttggatgattatgtta 24574837  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  ||||||||||||| |||||||||||||||||||||    
T  24574838 aaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggatc 24574886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 381
Target Start/End: Original strand, 42414128 - 42414276
Alignment:
Q  231 agggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttt 330  Q
    ||||||||| ||||| |||||||||||||||||| || |||||||| || || |||| ||||||||||||||||||| ||||| ||||||||| |||| |    
T  42414128 agggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgattcaaa-taaaaatcacatgcggttcggttcggtttggatgagtattct 42414226  T
Q  331 aaaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    |||||| |||||||   | |||||||||  |||||||||||||||||||||    
T  42414227 aaaaaa-attcgaaccaaaccgatccaattatatgcggtttaatttggatc 42414276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 232 - 383
Target Start/End: Complemental strand, 7612568 - 7612418
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    ||||||||| |||| ||||||||||  |||||| || ||||||||||| || |||| ||||||||||||||||||| ||||  || ||||||||||| ||    
T  7612568 gggtgttcatggtgcggtttggatcaattttgaggtaaaatgtcatccgattcaaagtaaaaatcacatgcggttcggttctgttgggatgactattcta 7612469  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatcag 383  Q
    ||||| ||  ||| ||||| |||||||| |||||| ||||||||||||||||    
T  7612468 aaaaa-atctgaactgatcagatccaaatatatgcagtttaatttggatcag 7612418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 241 - 381
Target Start/End: Complemental strand, 24319575 - 24319436
Alignment:
Q  241 cggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatatt 340  Q
    ||||| ||||||||||| |||| | || ||||||||||  ||||||||||||||||||| |||||||||| || |||||||||  | || |||||||| |    
T  24319575 cggtgcggtttggatcgatttttaggtaaaatgtcatcttatccaaaataaaaatcacacgcggttcagtccggtttggatga-aaattcaaaaaataat 24319477  T
Q  341 cgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
     |||  ||||||||||||| |||||||||||||||||||||    
T  24319476 tgaaccgatccgatccaaatatatgcggtttaatttggatc 24319436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 42430528 - 42430380
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||| |||||||||||||||||| |  |||||||| || ||||||||||||||| |||||||| || ||||| ||||||||| || | ||    
T  42430528 gggtgttcgcggtgcggtttggatcggttttgaggcaaaatgtcaacccatccaaaataaaaattacatgcggatcggttcggtttggatgagtactcta 42430429  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| ||  |||  || ||||| |||| |||||||||||||||||||||    
T  42430428 aaaaa-atctgaaccgaaccgatacaaatatatgcggtttaatttggatc 42430380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 381
Target Start/End: Original strand, 23695515 - 23695637
Alignment:
Q  248 gtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaattg 347  Q
    |||||||| | |||||| || ||||||||||| ||||||||||||||||||||  ||||||||||| ||||||| |||||| |||||||               
T  23695515 gtttggatggattttgaggtaaaatgtcatccgatccaaaataaaaatcacatatggttcagttcggtttggattactattctaaaaaa----------- 23695603  T
Q  348 atccgatccaaacatatgcggtttaatttggatc 381  Q
    |||||||||||| |||||||||||||||||||||    
T  23695604 atccgatccaaatatatgcggtttaatttggatc 23695637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 380
Target Start/End: Complemental strand, 3757468 - 3757336
Alignment:
Q  247 ggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaatt 346  Q
    ||||||||||||||||||    |||||||| || |||||||||||||||||||||| |||| ||||| |||| |||| |||| |||| || ||  |||      
T  3757468 ggtttggatcggttttgagacaaaatgtcaaccgatccaaaataaaaatcacatgccgttcggttcggtttgaatgagtattctaaagaa-atctgaacc 3757370  T
Q  347 gatccgatccaaacatatgcggtttaatttggat 380  Q
    || |||||||||| ||||||||||||||||||||    
T  3757369 gaaccgatccaaatatatgcggtttaatttggat 3757336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 31567723 - 31567866
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    ||||||| || |||||||||||||||| || || || ||||||||||| ||||||||||||||| ||||||| |||||     ||||| |||||||||||    
T  31567723 gggtgttgacagtgtggtttggatcggcttcgaggtaaaatgtcatccgatccaaaataaaaattacatgcgattcag-----tttgggtgactatttta 31567817  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||   ||| |||| ||| ||||||||||| |||||||||    
T  31567818 aaaaa-atccgaaccaatctgatctaaatatatgcggttttatttggatc 31567866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 359
Target Start/End: Complemental strand, 47310469 - 47310381
Alignment:
Q  269 aaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaattgatccgatccaaa 359  Q
    ||||||||||| ||| ||||||| ||||||||||||||| ||||| |||||||||||||| |||||||| |  |||| |||||||||||||    
T  47310469 aaatgtcatccgatctaaaataagaatcacatgcggttcggttcggtttggatgactattctaaaaaatct--gaatcgatccgatccaaa 47310381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 46251520 - 46251668
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||||||||  ||||||||||||||||||    ||| || | || |||||||||||||||||   ||||||| ||||| ||||||||  |||| ||    
T  46251520 gggtgttcacggtccggtttggatcggttttgagagaaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtttggatggttattcta 46251619  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || |||   ||||||||||||| |||||||||||| ||||||||    
T  46251620 aaaaa-atccgatccgatccgatccaaatatatgcggtttattttggatc 46251668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 47498427 - 47498575
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  ||||||||||||||||||    ||| || | || |||||||||||||||||   ||||||| ||||| ||||||||| |||| ||    
T  47498427 gggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtttggatgattattcta 47498526  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || |||   ||||||||||||| |||||||||||| ||||||||    
T  47498527 aaaaa-atccgatccgatccgatccaaatatatgcggtttattttggatc 47498575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 242 - 381
Target Start/End: Original strand, 47975226 - 47975364
Alignment:
Q  242 ggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattc 341  Q
    |||| |||||||||  ||||| | || ||| ||||||| ||||||||||||||||||||||||||| ||| | ||||||||| |||| ||||| | ||      
T  47975226 ggtgcggtttggattagtttttaggtaaaaagtcatccgatccaaaataaaaatcacatgcggttcggtttggtttggatgattattataaaaga-atct 47975324  T
Q  342 gaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||   |||| |||||||| ||||||||||| |||||||||    
T  47975325 gatccgatctgatccaaatatatgcggtttgatttggatc 47975364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 40436937 - 40436790
Alignment:
Q  228 ctaagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcgg-ttcagttcgatttggatgacta 326  Q
    ||||||||| ||| |||| || |||||||| |||| |||  ||||||||||| ||||||| |||||| |||| |||| || | |||| |||| |||||||    
T  40436937 ctaagggtggtcatggtgcggattggatcgttttttaagcaaaatgtcatccgatccaaagtaaaaaccacacgcggtttgatttcg-tttgaatgacta 40436839  T
Q  327 ttttaaaaaatattcgaattgatccgatccaaacatatgcggtttaattt 376  Q
    || ||||||| | |||||  ||||||||||||| ||||||| ||||||||    
T  40436838 ttctaaaaaa-aatcgaaccgatccgatccaaatatatgcgatttaattt 40436790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 7700726 - 7700661
Alignment:
Q  315 tttggatgactattttaaaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||||||| ||| |||||||| ||||||||  |||||||||||| |||||||||||||||||||||    
T  7700726 tttggatgattatgttaaaaaa-attcgaatcaatccgatccaaatatatgcggtttaatttggatc 7700661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 381
Target Start/End: Complemental strand, 8738928 - 8738827
Alignment:
Q  269 aaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaattgatccgatccaaacatatgcgg 368  Q
    ||||||||| ||||||||||||||||| |||||||||         |||||||||||||| ||||||  |  ||||  |||||||| |||| ||||||||    
T  8738928 aaatgtcattcaatccaaaataaaaattacatgcggt---------tttggatgactattctaaaaa--aaccgaaccgatccgattcaaatatatgcgg 8738840  T
Q  369 tttaatttggatc 381  Q
    |||||||||||||    
T  8738839 tttaatttggatc 8738827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 1576369 - 1576221
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| ||||||  ||| || |||||||||||||||||| |||||||| ||||| ||||||||| ||| |||    
T  1576369 gggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattatgtta 1576270  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  ||||||||||||| |||||||||||||||||||||    
T  1576269 aaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggatc 1576221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 27393110 - 27392962
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  ||||| |||||||||||| ||||||  |||  | |||||||||||||||||| |||||||| ||||| ||||||||| ||| |||    
T  27393110 gggtgttcgcggtccggtttagatcggttttgaggttaaaaatcaatcgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattatgtta 27393011  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  ||||||||||||| |||||||||||||||||||||    
T  27393010 aaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggatc 27392962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 36482233 - 36482381
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| |||| ||||||||||||||||| | |  ||   ||| || ||||||||||||||||||||||||||| ||||| ||||||||| ||| |||    
T  36482233 gggtgttcgcggtctggtttggatcggtttttaggcaaataatcaaccgatccaaaataaaaatcacatgcggttcggttcggtttggatgattatgtta 36482332  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  ||||||||||||| |||||||||||||||||||||    
T  36482333 aaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggatc 36482381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 383
Target Start/End: Original strand, 8937355 - 8937495
Alignment:
Q  242 ggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattc 341  Q
    |||| |||||||||| ||||||| || ||||||||||| |||||||||||||||||||| |||||| |||   || |||| |||||| ||||||| ||      
T  8937355 ggtgcggtttggatcagttttgaggtaaaatgtcatccgatccaaaataaaaatcacattcggttcggttttgttgggatcactattctaaaaaa-atct 8937453  T
Q  342 gaattgatccgatccaaacatatgcggtttaatttggatcag 383  Q
    ||| | |||  ||||||| |||||| ||||||||||||||||    
T  8937454 gaactaatcatatccaaatatatgcagtttaatttggatcag 8937495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 232 - 336
Target Start/End: Original strand, 29987573 - 29987677
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| || || |||||| | ||||||||| |  |||| || |||||||||||||||||||||||| |||||||||||  |||||||||||||| ||    
T  29987573 gggtgttcgcgatgcggtttgaaacggttttgaggaaaaatatcttccaatccaaaataaaaatcacatacggttcagttcagtttggatgactattcta 29987672  T
Q  332 aaaaa 336  Q
    |||||    
T  29987673 aaaaa 29987677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 323162 - 323311
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  ||||||||||||||||||    ||| || | || ||||||||||||||| |   ||||||| ||||| ||||||||| |||| ||    
T  323162 gggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaattatgcgcggttcggttcggtttggatgattattcta 323261  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || |||   ||||||||||||| |||||||||||| ||||||||    
T  323262 aaaaaaatccgatccgatccgatccaaatatatgcggtttattttggatc 323311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 381
Target Start/End: Original strand, 31279729 - 31279892
Alignment:
Q  218 taagatatagctaagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgattt 317  Q
    ||||||| || || |||||||| |||||  ||||| ||||||||||| |  ||  |||| || ||| ||||||||||| ||||||||||  ||||| |||    
T  31279729 taagatagagataggggtgttcgcggtgcagtttgaatcggttttgaggcaaaccgtcaaccgatctaaaataaaaattacatgcggttttgttcggttt 31279828  T
Q  318 ggatgactattttaaaaaatattcgaattg-atccgatccaaacatatgcggtttaatttggatc 381  Q
    |||||| || | ||||||| || ||||  | | |||||||||||||||||| || ||||||||||    
T  31279829 ggatgagtactctaaaaaa-atccgaaccgaaaccgatccaaacatatgcgattgaatttggatc 31279892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 36582091 - 36582234
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||  ||||| ||||| |||||||||| | |  ||| |||| || ||||||||||||||| ||||| ||||| ||||| |||| |||| |||| ||    
T  36582091 gggtgtttgcggtgcggtttagatcggttttaaggcaaaacgtcaaccgatccaaaataaaaattacatgtggttcggttcggtttgaatgagtattcta 36582190  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| ||  |||     |||||||||| ||||||| |||||||||||||    
T  36582191 aaaaa-atcagaa-----ccgatccaaatatatgcgttttaatttggatc 36582234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 14242860 - 14242956
Alignment:
Q  241 cggtgtggtttggatcggttttgaagttaaatgtcatcc-aatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaa 336  Q
    ||||| |||||||||||||||||| || ||| ||||||| | |  ||||| |||||| |||| ||| ||||| | ||||||||| |||| |||||||    
T  14242860 cggtggggtttggatcggttttgatgtaaaaagtcatccgattaaaaaattaaaatcgcatgtggtgcagtttggtttggatgaatattctaaaaaa 14242956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 23222885 - 23222917
Alignment:
Q  348 atccgatccaaacatatgcggtttaatttggat 380  Q
    |||||||||||| ||||||||||||||||||||    
T  23222885 atccgatccaaatatatgcggtttaatttggat 23222917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 23226926 - 23226974
Alignment:
Q  250 ttggatcggtttt-gaagttaaatgtcatccaatccaaaataaaaatca 297  Q
    ||||||||||||| || || ||||||||||| |||||||||||||||||    
T  23226926 ttggatcggtttttgaggtaaaatgtcatccgatccaaaataaaaatca 23226974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 23236079 - 23236127
Alignment:
Q  250 ttggatcggtttt-gaagttaaatgtcatccaatccaaaataaaaatca 297  Q
    ||||||||||||| || || ||||||||||| |||||||||||||||||    
T  23236079 ttggatcggtttttgaggtaaaatgtcatccgatccaaaataaaaatca 23236127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 7607863 - 7608011
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| ||||||  ||| || |||||||||||||||||| |||||||| ||||| ||||||||| ||| |||    
T  7607863 gggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattatgtta 7607962  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  ||||||||||||| |||||||||||||||||||||    
T  7607963 aaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggatc 7608011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 16704945 - 16705093
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| ||||||  ||| || |||||||||||||||||| |||||||  ||||| ||||||||| ||| |||    
T  16704945 gggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggtttggttcggtttggatgattatgtta 16705044  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  ||||||||||||| |||||||||||||||||||||    
T  16705045 aaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggatc 16705093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 242 - 376
Target Start/End: Original strand, 10483978 - 10484107
Alignment:
Q  242 ggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattc 341  Q
    |||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |     ||||| ||||||||| |||| ||||||| | |     
T  10483978 ggtgcggtttggatcggttttgaggtaaaatgtcatccaatctaaaataaaaatcacatgtg-----gttcggtttggatgaatattctaaaaaaaaatt 10484072  T
Q  342 gaattgatccgatccaaacatatgcggtttaattt 376  Q
     || |||||||||||||| ||||||||||||||||    
T  10484073 aaactgatccgatccaaatatatgcggtttaattt 10484107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 30396090 - 30395942
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| || ||| |||| || ||||||||||||||||||| |||| |  ||||| ||||||||| |||| ||    
T  30396090 gggtgttcgcggtccggtttggatcggttttgaggtaaaaagtcaaccgatccaaaataaaaatcacacgcggcttggttcggtttggatgattattcta 30395991  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| ||  ||   ||||||||||||| ||||||| |||||||||||||    
T  30395990 aaaaa-atctgatccgatccgatccaaatatatgcgatttaatttggatc 30395942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 236 - 336
Target Start/End: Original strand, 4463776 - 4463876
Alignment:
Q  236 gttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaa 335  Q
    |||| ||||| |||||||||| |||||||    ||||||||||| ||| |||||||||||||||||| |||||||| | |||||||||||||| ||||||    
T  4463776 gttcgcggtgcggtttggatctgttttgagaaaaaatgtcatccgatctaaaataaaaatcacatgctgttcagtttggtttggatgactattctaaaaa 4463875  T
Q  336 a 336  Q
    |    
T  4463876 a 4463876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 21947227 - 21947079
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||| |    ||| || | ||||||||||||||||||||   ||||||| ||||| ||||||||| |||| ||    
T  21947227 gggtgttcgcggtccggtttggatcggtttttagagcaaaagtgaaccaatccaaaataaaaatcatgcgcggttcggttcggtttggatgattattcta 21947128  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || |||   ||||| ||||||| |||||||||||| ||||||||    
T  21947127 aaaaa-atccgatccgatccaatccaaatatatgcggtttattttggatc 21947079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 381
Target Start/End: Original strand, 3900707 - 3900853
Alignment:
Q  233 ggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaa 332  Q
    ||||||||||||| |||||| ||||||||||| |  ||| || |||  |||  |||||||||||||||| | ||| ||||| |||||||||||||| |||    
T  3900707 ggtgttcacggtgcggtttgaatcggttttgaggcaaaacgttatctgatctgaaataaaaatcacatgtgattcggttcggtttggatgactattctaa 3900806  T
Q  333 aaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
     ||  |  | ||  ||||||||||||| |||| | ||||||||||||||    
T  3900807 gaa--agccaaaccgatccgatccaaatatattcagtttaatttggatc 3900853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 336
Target Start/End: Complemental strand, 16110745 - 16110641
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||||||||  ||||||||||||||||  |   ||| || | || |||||||||||||||||  |||||||| ||| | ||||||||| |||||||    
T  16110745 gggtgttcacggtccggtttggatcggttttctatgaaaaagtgaaccgatccaaaataaaaatcatgtgcggttcggtttggtttggatgattatttta 16110646  T
Q  332 aaaaa 336  Q
    |||||    
T  16110645 aaaaa 16110641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 31945563 - 31945514
Alignment:
Q  230 aagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatcc 279  Q
    |||||||||| ||||||||||||  |||||||||| |||||| |||||||    
T  31945563 aagggtgttcgcggtgtggtttgtttcggttttgaggttaaaagtcatcc 31945514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 227 - 380
Target Start/End: Original strand, 37282223 - 37282375
Alignment:
Q  227 gctaagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgacta 326  Q
    |||| |||||||| ||||  |||||||||||||||||| ||||||  ||| || |||||||||||||||||  |||||||| ||||| ||||||||| ||    
T  37282223 gctaggggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcatgtgcggttcggttcggtttggatgatta 37282322  T
Q  327 ttttaaaaaatattcgaattgatccgatccaaacatatgcggtttaatttggat 380  Q
    | |||||||| || ||||  ||||||||||||| ||||||||||||||||||||    
T  37282323 tgttaaaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggat 37282375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 19636126 - 19636274
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  | |||||||||||||||| || |||  | | || |||||||||||||||||| |||||||| ||||| ||||||||| ||| |||    
T  19636126 gggtgttcgcggtccgatttggatcggttttgaggtaaaaaattaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattatgtta 19636225  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  ||||||||||||| |||||||||||||||||||||    
T  19636226 aaaaa-atccgaaccgatccgatccaaatatatgcggtttaatttggatc 19636274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 247 - 381
Target Start/End: Complemental strand, 29283491 - 29283358
Alignment:
Q  247 ggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaatt 346  Q
    |||||||||||||||||| || |||| |||||| ||||||||||||||||||| | ||||| ||||  |||||||||||||| ||||||| ||  ||||     
T  29283491 ggtttggatcggttttgaggtaaaatatcatccgatccaaaataaaaatcacacgtggttcggttcagtttggatgactattctaaaaaa-atatgaatc 29283393  T
Q  347 gatccgatccaaacatatgcggtttaatttggatc 381  Q
    || |||||||||| |||  ||||||||||||||||    
T  29283392 gacccgatccaaatataaacggtttaatttggatc 29283358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 25393168 - 25393043
Alignment:
Q  241 cggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatatt 340  Q
    ||||| |||||| |||  ||||||||| ||| ||||||| |||||||||||||||||||||     ||||| | ||||||| | ||||||||||||        
T  25393168 cggtgcggtttgaatcaattttgaagtaaaaagtcatccgatccaaaataaaaatcacatg-----cagtttggtttggataattattttaaaaaa---- 25393078  T
Q  341 cgaattgatccgatccaaacatatgcggtttaatttg 377  Q
      | ||||||||||||||| |||||||||||||||||    
T  25393077 --atttgatccgatccaaatatatgcggtttaatttg 25393043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 381
Target Start/End: Complemental strand, 1030989 - 1030858
Alignment:
Q  250 ttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaa-ttga 348  Q
    ||||||||||||| |  | |||||||| || ||||||||||||||||||||||||||| ||||| ||| ||||| | || ||||||| || ||||    |    
T  1030989 ttggatcggtttttagataaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttagatgagttttctaaaaaa-atccgaaccaaa 1030891  T
Q  349 tccgatccaaacatatgcggtttaatttggatc 381  Q
     |||||||||  |||||||||||||||||||||    
T  1030890 accgatccaattatatgcggtttaatttggatc 1030858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 382
Target Start/End: Complemental strand, 25706820 - 25706671
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  ||||||||||| |||||| |  ||| || | || ||| |||||||||||||  |||||||| ||||| ||||||||| |||| ||    
T  25706820 gggtgttcgcggttcggtttggatcgattttgaggggaaaagtgaaccgatctaaaataaaaatcatgtgcggttcggttcggtttggatgattattcta 25706721  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatca 382  Q
    ||||| || |||   | |||| |||||| |||||||||||| |||||||||    
T  25706720 aaaaa-atccgatccggtccggtccaaatatatgcggtttattttggatca 25706671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 336
Target Start/End: Original strand, 27166889 - 27166977
Alignment:
Q  248 gtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaa 336  Q
    ||||| ||||||||||||   |||| | |||| ||| ||||||||||| |||| || ||| ||||| ||||||||||||||||||||||    
T  27166889 gtttgtatcggttttgaaacaaaatattatccgatctaaaataaaaattacatccgattcggttcggtttggatgactattttaaaaaa 27166977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 41198078 - 41198226
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| |||||  |||||||||| |||||| || |||||||| || ||||||||||||||||||||||||||| ||||| ||||||||| |||| ||    
T  41198078 gggtgttcgcggtgcagtttggatcgattttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttggatgagtattcta 41198177  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    | ||| || |||| ||||| |||||||| ||||||| |||||||||||||    
T  41198178 acaaa-atccgaactgatctgatccaaatatatgcgatttaatttggatc 41198226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 14462227 - 14462079
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||  |||| ||||||||||||||||||| ||||||  ||| || ||||||||||||||| || |||||||| ||||| ||||||||| ||| |||    
T  14462227 gggtgtttgcggtctggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaattacgtgcggttcggttcggtttggatgattatgtta 14462128  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  ||||||||| ||| |||||||||||||||||||||    
T  14462127 aaaaa-atccgaaccgatccgatctaaatatatgcggtttaatttggatc 14462079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 24615308 - 24615165
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    ||||||||| ||||  ||||||||||||||||| || |||||||| || ||| |||||||||||||||||||     ||||| ||||||||| |||| ||    
T  24615308 gggtgttcatggtgcagtttggatcggttttgaggtaaaatgtcaaccgatctaaaataaaaatcacatgcg-----gttcggtttggatgagtattcta 24615214  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || ||||  || |||||||||| |||||||||||||||||||||    
T  24615213 aaaaa-atccgaaccgagccgatccaaatatatgcggtttaatttggatc 24615165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 381
Target Start/End: Original strand, 35671681 - 35671826
Alignment:
Q  235 tgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaa 334  Q
    ||||| ||||| | |||||||| ||||||| || |||||||| || ||| ||||||||||||| ||||| ||| |||||||||| |||| |||| |||||    
T  35671681 tgttcgcggtgcgatttggatcagttttgaggtaaaatgtcaaccgatctaaaataaaaatcatatgcgattcggttcgatttgaatgagtattctaaaa 35671780  T
Q  335 aatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    || || ||||  || |||||||||| |||||| ||||||||||||||    
T  35671781 aa-atccgaaccgaaccgatccaaatatatgcagtttaatttggatc 35671826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 248 - 381
Target Start/End: Complemental strand, 28656087 - 28655955
Alignment:
Q  248 gtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaattg 347  Q
    ||||| |||||||||||    ||||||||||| || ||||||||||||||||||| |||| ||||||||| |||||||||| ||||||| ||  |||       
T  28656087 gtttgaatcggttttgagacaaaatgtcatccgattcaaaataaaaatcacatgcagttcggttcgattttgatgactattctaaaaaa-atcagaacca 28655989  T
Q  348 atccgatccaaacatatgcggtttaatttggatc 381  Q
    |||||||| ||| |||||||||||||||||||||    
T  28655988 atccgatcaaaatatatgcggtttaatttggatc 28655955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 5559915 - 5559762
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| || |||  ||| || ||| |||||||||||||| |||||||| ||||||||||||||| ||| |||    
T  5559915 gggtgttcgcggtccggtttggatcggttttgaggtcaaaaatcaaccgatctaaaataaaaatcacgtgcggttcggttcgatttggatgattatgtta 5559816  T
Q  332 aaaaa----tattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    |||||     |  ||||  ||||||||||||| ||||| |||||||||||||||    
T  5559815 aaaaaatccgaaccgaaccgatccgatccaaatatatgtggtttaatttggatc 5559762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 380
Target Start/End: Original strand, 11619599 - 11619732
Alignment:
Q  241 cggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatatt 340  Q
    ||||| |||||||||| ||||||| |   |||||||||| ||||||||||||||||||||| |     ||||| |||||| ||||||||||||||| |||    
T  11619599 cggtgcggtttggatcagttttgaggcagaatgtcatccgatccaaaataaaaatcacatgtg-----gttcggtttggacgactattttaaaaaaaatt 11619693  T
Q  341 cgaattgatccgatccaaacatatgcggtttaatttggat 380  Q
     |||  ||| | ||||||| |||| |||||||||||||||    
T  11619694 -gaaccgattcaatccaaatatatacggtttaatttggat 11619732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 336
Target Start/End: Complemental strand, 36851168 - 36851118
Alignment:
Q  286 aaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaa 336  Q
    |||||||||||||||| | |||||||   ||||||||||||||||||||||    
T  36851168 aaataaaaatcacatgtgattcagttaagtttggatgactattttaaaaaa 36851118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 38856258 - 38856216
Alignment:
Q  293 aatcacatgcggttcagttcgatttggatgactattttaaaaa 335  Q
    ||||||||| |||||| |||||||||||||||||| |||||||    
T  38856258 aatcacatgtggttcaattcgatttggatgactatattaaaaa 38856216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 534983 - 535067
Alignment:
Q  248 gtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaa 332  Q
    ||||| |||| |||| |||| ||| ||||||||||| |||||||||||||| |  | ||||||| | || |||||||| ||||||    
T  534983 gtttgcatcgattttaaagtaaaaagtcatccaatctaaaataaaaatcacgtttgattcagtttggttcggatgactgttttaa 535067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 232 - 383
Target Start/End: Complemental strand, 27111191 - 27111041
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||  ||||| |||||||||| ||||||| || |||||||| || |||||||||||||||||||| |||||| ||||| ||||||||| |||| ||    
T  27111191 gggtgtttgcggtgcggtttggatcagttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatacggttcggttcggtttggatgagtattcta 27111092  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatcag 383  Q
    ||||| || ||||  || |||||||||  |||||||||||||||||||||||    
T  27111091 aaaaa-atccgaaccgaaccgatccaattatatgcggtttaatttggatcag 27111041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 226 - 377
Target Start/End: Original strand, 35449202 - 35449352
Alignment:
Q  226 agctaagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgact 325  Q
    ||||| ||||||||  |||| |||||||||  ||||||| || |||||||| || ||||||||||||||||||||||||||| ||||| ||||||||| |    
T  35449202 agctaggggtgttcgtggtgcggtttggattagttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttggatgagt 35449301  T
Q  326 attttaaaaaatattcgaattgatccgatccaaacatatgcggtttaatttg 377  Q
    ||||| ||||| ||| |||  || |||||||||| |||||||||||||||||    
T  35449302 atttttaaaaa-atttgaaccgaaccgatccaaatatatgcggtttaatttg 35449352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 40044697 - 40044554
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||| |||||| |||| |||||| |  ||||||||||| |||||||||||||||||||||||     ||||| |||||||||||| |||     
T  40044697 gggtgttcgcggtgcggtttgaatcgattttgaggcaaaatgtcatccgatccaaaataaaaatcacatgcg-----gttcggtttggatgactaattt- 40044604  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||||||  |||||||||| ||||||| |||||||||||||||||||||    
T  40044603 aaaaatatctgaattgatcctatccaaatatatgcggtttaatttggatc 40044554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 40987865 - 40987717
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||||||||||| ||||||  ||| || |||||||||||||||||| |||||||| ||||| ||||||||| ||| |||    
T  40987865 gggtgttcgcggtccggtttggatcggttttgaggttaaaaatcaaccgatccaaaataaaaatcacgtgcggttcggttcggtttggatgattatgtta 40987766  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| ||  |||  ||||||| ||||| |||||||||||||||||||||    
T  40987765 aaaaa-atctgaaccgatccgacccaaatatatgcggtttaatttggatc 40987717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 1495448 - 1495596
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  |||||||||| ||||||| || |||||||| || |||| ||||||| |||||||| ||||| ||||| ||||||||| |||| ||    
T  1495448 gggtgttcgcggtccggtttggatcagttttgaggtaaaatgtcaaccgatccgaaataaatatcacatgtggttcggttcggtttggatgagtattcta 1495547  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || | ||  || |||||||||| |||||||||||||||||||||    
T  1495548 aaaaa-atccaaaccgaaccgatccaaatatatgcggtttaatttggatc 1495596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 17342039 - 17342186
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||||||||| | ||| |||  |||||||    ||||||| |||||||||||||||||||||||||||||||  || ||||||| |||||||| ||    
T  17342039 gggtgttcacggtgcgatttagattagttttgagacaaaatgtcgtccaatccaaaataaaaatcacatgcggttcgatttgatttggttgactattcta 17342138  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| ||| |||   ||||||||| || |||||||||||||||||||||    
T  17342139 aaaaa-att-gaacctatccgatccgaatatatgcggtttaatttggatc 17342186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 41061768 - 41061621
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||| |||||||||||||||| | || |||||||| || || |||||||||||||||||| ||||  ||||||||||||||| |||||||    
T  41061768 gggtgttcgcggtgcggtttggatcggttttaaggtaaaatgtcaaccgattcaaaataaaaatcacatgtggtt-ggttcgatttggatgagtatttta 41061670  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| ||  ||   || |||||||||  |||||| ||||||||||||||    
T  41061669 aaaaa-atctgatccgaaccgatccaattatatgctgtttaatttggatc 41061621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 383
Target Start/End: Original strand, 33745832 - 33745972
Alignment:
Q  241 cggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatatt 340  Q
    ||||| |||||| |||| |||||| || |||| |||||  || ||||||||||||| ||||||||||  |||  |||||||||||||| ||||||  ||     
T  33745832 cggtgcggtttgcatcgattttgaggtaaaatatcatctgattcaaaataaaaatcgcatgcggttcgattcagtttggatgactattctaaaaa--atc 33745929  T
Q  341 cgaattgatccgatccaaacatatgcggtttaatttggatcag 383  Q
    ||||  |  |||||||||| ||||||||||||||||| |||||    
T  33745930 cgaaacggaccgatccaaatatatgcggtttaatttgaatcag 33745972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 42715745 - 42715834
Alignment:
Q  247 ggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaa 336  Q
    |||||||||||||||||| |  |||||||| || ||| ||||||||| ||||||||||||| |||   ||||||||| |||||| |||||    
T  42715745 ggtttggatcggttttgaggcaaaatgtcaaccgatctaaaataaaattcacatgcggttcggttttgtttggatgattatttttaaaaa 42715834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 381
Target Start/End: Original strand, 26639796 - 26639927
Alignment:
Q  249 tttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaattga 348  Q
    ||||||||||||||||  | |||| |||||| ||| ||||||||||| | |||||||||| || | ||| |||||||||| | |||||||| | ||  ||    
T  26639796 tttggatcggttttgagttaaaatatcatccgatctaaaataaaaattatatgcggttcaatttggtttagatgactattct-aaaaatatccaaaccga 26639894  T
Q  349 tccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||||| ||| |||||  ||||||||| ||||    
T  26639895 tccgatctaaatatatgaagtttaattttgatc 26639927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 381
Target Start/End: Complemental strand, 4986623 - 4986485
Alignment:
Q  242 ggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattc 341  Q
    |||| |||||| |||| ||||||  | ||||||||| | ||| ||||||||||| ||||||||||  ||||| |||| |||| |||| ||||||| |||     
T  4986623 ggtgcggtttgaatcgattttgagctaaaatgtcattcgatctaaaataaaaattacatgcggtttggttcggtttgaatgattattctaaaaaa-attt 4986525  T
Q  342 gaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    |||   |||  ||||||| ||||| |||||||||||||||    
T  4986524 gaaccaatcaaatccaaatatatgtggtttaatttggatc 4986485  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 381
Target Start/End: Complemental strand, 13555277 - 13555147
Alignment:
Q  249 tttggatcggttttgaagttaaat-gtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaattg 347  Q
    ||||||||| |||||| || |||  |||| || ||||||||||||||| |  |||||||| ||||| ||||||||| ||| |||||||| |||| ||  |    
T  13555277 tttggatcgattttgaggtaaaaaagtcaaccgatccaaaataaaaattatgtgcggttcggttcggtttggatgattatgttaaaaaa-attcaaaccg 13555179  T
Q  348 atccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||  | |||| |||||||||||||||| ||||    
T  13555178 atcc--ttcaaatatatgcggtttaatttagatc 13555147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 381
Target Start/End: Original strand, 21351877 - 21352028
Alignment:
Q  229 taagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatt 328  Q
    ||||||||||| ||||| |||||||||||||||||| || |||||||| || |||||||||||||||||||||| |||| |||||  |||||||| ||||    
T  21351877 taagggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcagttcggttcggcttggatgaatatt 21351976  T
Q  329 ttaaaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
     ||||||| || | ||  || | |||||||  |||||||||||||||||||||    
T  21351977 ctaaaaaa-atccaaacagaactgatccaattatatgcggtttaatttggatc 21352028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 383
Target Start/End: Complemental strand, 10997765 - 10997612
Alignment:
Q  229 taagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatt 328  Q
    ||||||||||| | |||   |||| ||||||||||| |  ||||||||||||||| |||||||||||||||||  |||||||||| ||||||||||||||    
T  10997765 taagggtgttcgcagtgcattttgaatcggttttgaggcaaaatgtcatccaatctaaaataaaaatcacatgtagttcagttcggtttggatgactatt 10997666  T
Q  329 ttaaaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatcag 383  Q
     |||||||  | ||||  ||||||||||||| |||||| ||| ||||||||||||    
T  10997665 ctaaaaaa-gtccgaaccgatccgatccaaatatatgcagttaaatttggatcag 10997612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 381
Target Start/End: Original strand, 42295366 - 42295523
Alignment:
Q  223 tatagctaagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatg 322  Q
    |||| ||| |||||||||||||| |||||||||| ||||||| || ||||| || || ||||||||||||||||||||| ||||| ||||| ||||||||    
T  42295366 tataactaggggtgttcacggtgcggtttggatcagttttgaggtaaaatgccaaccgatccaaaataaaaatcacatgtggttcggttcggtttggatg 42295465  T
Q  323 actattttaaaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    | |||| ||||||| ||  |||  || || || |||| |||||| ||||||||||||||    
T  42295466 agtattataaaaaa-atctgaaccgagccaattcaaatatatgcagtttaatttggatc 42295523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 230 - 381
Target Start/End: Complemental strand, 29772735 - 29772585
Alignment:
Q  230 aagggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattt 329  Q
    |||| ||||| ||||| ||||| ||| | ||||||  | ||| ||||| |||| |||||||||||||| |||||||||  |||| ||||||||||||||     
T  29772735 aaggatgttcgcggtgcggtttagattgattttgagataaaaagtcattcaatacaaaataaaaatcatatgcggttcgattcggtttggatgactattc 29772636  T
Q  330 taaaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||||| || | || ||||| |||||||| |||||||||||||||||||||    
T  29772635 taaaaaa-atccaaactgatctgatccaaatatatgcggtttaatttggatc 29772585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 381
Target Start/End: Complemental strand, 22596867 - 22596730
Alignment:
Q  242 ggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattc 341  Q
    |||| |||||||||||||||||| |  ||| |||| || ||| ||||||||||| |  |||||||||||||| ||||||| | |||| ||||||  ||||    
T  22596867 ggtgcggtttggatcggttttgaggcaaaacgtcaaccgatctaaaataaaaattatgtgcggttcagttcggtttggataagtattctaaaaa--attc 22596770  T
Q  342 gaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    |||  || |||||||||| |||||||||||||||||||||    
T  22596769 gaaccgaaccgatccaaatatatgcggtttaatttggatc 22596730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 247 - 381
Target Start/End: Complemental strand, 16672518 - 16672390
Alignment:
Q  247 ggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactattttaaaaaatattcgaatt 346  Q
    |||||||||||||||||| ||||||  ||| || |||||||||||||||||  |||||||| ||||| ||||||||| ||| |||||||| || ||||      
T  16672518 ggtttggatcggttttgaggttaaaaatcaacctatccaaaataaaaatcatgtgcggttcggttcggtttggatgattatgttaaaaaa-atccgaa-- 16672422  T
Q  347 gatccgatccaaacatatgcggtttaatttggatc 381  Q
       || ||||||| |||||||||||||||||||||    
T  16672421 ---ccaatccaaatatatgcggtttaatttggatc 16672390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 381
Target Start/End: Complemental strand, 18512098 - 18511950
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| ||||  ||||||||||||||||||    ||| || | || |||||||||||||||||   ||||||| ||||| ||||||||| ||||  |    
T  18512098 gggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtttggatgattattcaa 18511999  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| || |||   ||||||||||||| |||||||||||| ||||||||    
T  18511998 aaaaa-atccgatccgatccgatccaaatatatgcggtttattttggatc 18511950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 379
Target Start/End: Complemental strand, 39989346 - 39989200
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||| || || ||||| |||| ||||| || | ||||||||| ||||  ||||||||||| |||| | |||| ||| | |||| || |||||  ||    
T  39989346 gggtgttcgcgctgcggtttagatcagttttaaaataaaatgtcattcaatttaaaataaaaattacatacagttcggtttggtttgaataactatacta 39989247  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttgga 379  Q
    ||||| |||||||  ||||||||||||| ||||| |||||||||||||    
T  39989246 aaaaa-attcgaaccgatccgatccaaatatatgtggtttaatttgga 39989200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 19968681 - 19968630
Alignment:
Q  247 ggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcac 298  Q
    |||||||||||||||||| |  ||| || |||||||||||||||||||||||    
T  19968681 ggtttggatcggttttgaggcaaaaagttatccaatccaaaataaaaatcac 19968630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 846 - 994
Alignment:
Q  232 gggtgttcacggtgtggtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttcgatttggatgactatttta 331  Q
    |||||||||||||  |||||||||||||||||| || |||||||| || |||| ||||||| | ||||||| |||| ||||| ||||||||| |||| ||    
T  846 gggtgttcacggtccggtttggatcggttttgaggtaaaatgtcaaccgatccgaaataaataccacatgcagttcggttcggtttggatgagtattcta 945  T
Q  332 aaaaatattcgaattgatccgatccaaacatatgcggtttaatttggatc 381  Q
    ||||| ||  |||  || || ||||||| |||||||||||||||||||||    
T  946 aaaaa-atcagaaccgaaccaatccaaatatatgcggtttaatttggatc 994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 6019 - 5955
Alignment:
Q  248 gtttggatcggttttgaagttaaatgtcatccaatccaaaataaaaatcacatgcggttcagttc 312  Q
    |||| ||||| |||||| || |||| |||||| ||| ||||||||||||||||||| ||||||||    
T  6019 gtttagatcgattttgaggtaaaatatcatccgatctaaaataaaaatcacatgcgattcagttc 5955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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