View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_20 (Length: 464)

Name: NF1166_low_20
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_20
NF1166_low_20
[»] chr4 (3 HSPs)
chr4 (30-464)||(50652942-50653381)
chr4 (263-406)||(50640965-50641108)
chr4 (290-406)||(50635900-50636016)


Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 30 - 464
Target Start/End: Original strand, 50652942 - 50653381
Alignment:
Q  30 ctctttccattggagaagctctaaatgcattaaattagaagacatttacataattattactacaata-----ttccatagacaacatataattattaact 124  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  50652942 ctctttccattggagaagctctaaatgcattagattagaagacatttacataattattactacaatataatattccatagacaacatataattattaact 50653041  T
Q  125 aatagaagcataaataggtttaaggatttaagcaaccaaatatctagagtaattgtctaacaatagatgatgtaacagctgaaacatcatgcatagcatt 224  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50653042 aatagaagcataaataggtttaaggatttaagcaaacaaatatctagagtaattgtctaacaatagatgatgtaacagctgaaacatcatgcatagcatt 50653141  T
Q  225 attctgttttgtgagtggagatttcccattgaactcactctcacaataagtagcctcattagcagcatcatttgcaccatcttctgcaaacttaggatcc 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50653142 attctgttttgtgagtggagatttcccattgaactcactctcacaataagtagcctcattagcagcatcatttgcaccatcttctgcaaacttaggatcc 50653241  T
Q  325 cctttctccaaagcttcaatagcttgaggtatatcagctatcaaaattgctctatatttgtcaccacaagaactcaaagctttcctagctccatttccca 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50653242 cctttctccaaagcttcaatagcttgaggtatatcagctatcaaaattgctctatatttgtcaccacaagaactcaaagctttcctagctccatttccca 50653341  T
Q  425 acctttgtagctgttggatcttatttaatccatcgtttgc 464  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  50653342 acctttgtagctggtggatcttatttaatccatcgtttgc 50653381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 406
Target Start/End: Original strand, 50640965 - 50641108
Alignment:
Q  263 tctcacaataagtagcctcattagcagcatcatttgcaccatcttctgcaaacttaggatcccctttctccaaagcttcaatagcttgaggtatatcagc 362  Q
    ||||||||  ||| || ||||| ||||||||||||||||||||||||||||  ||||||||||||| || ||||||| |||| | ||  || | | || |    
T  50640965 tctcacaagtagtggcgtcatttgcagcatcatttgcaccatcttctgcaactttaggatccccttgcttcaaagctgcaatggattttggcacaacatc 50641064  T
Q  363 tatcaaaattgctctatatttgtcaccacaagaactcaaagctt 406  Q
    || |||||||| ||||||| |  || |||| |||||||||||||    
T  50641065 taccaaaattgatctatatctaccagcacatgaactcaaagctt 50641108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 406
Target Start/End: Original strand, 50635900 - 50636016
Alignment:
Q  290 catcatttgcaccatcttctgcaaacttaggatcccctttctccaaagcttcaatagcttgaggtatatcagctatcaaaattgctctatatttgtcacc 389  Q
    ||||||||||||||||||||||||| || ||||| |||| || ||||||| ||| || ||  || | |||||||| |||||||||||| ||| |  || |    
T  50635900 catcatttgcaccatcttctgcaaattttggatctccttgcttcaaagctgcaacagattttggcacatcagctaccaaaattgctctgtatctaccagc 50635999  T
Q  390 acaagaactcaaagctt 406  Q
    ||| ||| |||||||||    
T  50636000 acatgaattcaaagctt 50636016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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