View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_21 (Length: 459)

Name: NF1166_low_21
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_21
NF1166_low_21
[»] chr7 (2 HSPs)
chr7 (152-435)||(27272982-27273270)
chr7 (290-329)||(9332985-9333024)
[»] chr3 (3 HSPs)
chr3 (98-360)||(6077714-6077977)
chr3 (290-329)||(22157926-22157965)
chr3 (185-242)||(9765844-9765900)
[»] chr6 (2 HSPs)
chr6 (210-435)||(13550309-13550528)
chr6 (81-142)||(13550247-13550308)
[»] chr8 (1 HSPs)
chr8 (185-330)||(43651610-43651750)
[»] chr5 (1 HSPs)
chr5 (185-330)||(21114819-21114959)
[»] chr4 (2 HSPs)
chr4 (280-328)||(7807628-7807676)
chr4 (175-260)||(39482432-39482516)
[»] chr2 (1 HSPs)
chr2 (397-435)||(24867920-24867958)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 152 - 435
Target Start/End: Original strand, 27272982 - 27273270
Alignment:
Q  152 aaagggttaagaaatataggaacttggtgaaaccctgtcatgtttttctctttatgtgtggatgaaacgtctcttgcaattgtaatttggaacgtccata 251  Q
    |||||| ||||||| |||| |||||| |||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27272982 aaagggataagaaagatagaaacttgatgaaaccctgtcatgttttcgtctttatctgtggatgaaacgtctcttgcaattgtaatttggaacgtccata 27273081  T
Q  252 ctcccattttcattggnnnnnnnn-----gtcctgagaagaaaaacaatagagccgctcaatcctcaattctcattagcaattgtaaaatagaaagagag 346  Q
    ||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27273082 ctcccattttcattggtttttttttttttgtcctgagaagaaaaacaatagagccgctcaatcctcaattctcattagcaattgtaaaatagaaagagag 27273181  T
Q  347 tgaaactgccat-aatcaccctgttaaagcatactcatgtgannnnnnnnncaaaagaagattcatgaggctaacaaaataagataaaaa 435  Q
    |||||||||||| |||||||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||||||||||    
T  27273182 tgaaactgccataaatcaccctgttaaagcatactcatgtga-ttttttttcaaaagaagattcatgaggttaacaaaataagataaaaa 27273270  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 9332985 - 9333024
Alignment:
Q  290 aacaatagagccgctcaatcctcaattctcattagcaatt 329  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  9332985 aacaatagaaccgctcattcctcaattctcattagcaatt 9333024  T

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Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 98 - 360
Target Start/End: Complemental strand, 6077977 - 6077714
Alignment:
Q  98 ttgtcaattggatgaaatgtatatttctctttgttccaaaataaaatggatgataaa-gggttaagaaatataggaacttggtgaaaccctgtcatgttt 196  Q
    ||||||| |||||||||||||||||||||||||||  |||||||| ||||||||||| |||  ||||||||||| |||||||||||||||||||||| ||    
T  6077977 ttgtcaaatggatgaaatgtatatttctctttgtt--aaaataaa-tggatgataaaagggaaaagaaatatagaaacttggtgaaaccctgtcatgctt 6077881  T
Q  197 ttctctttatgtgtggatgaaacgt--ctcttgcaattgtaatttggaacgtccatactcccattttcattgg------nnnnnnnngtcctgagaagaa 288  Q
    | |||||||| | ||||||||||||  |||||||||||||||||||||||||     ||| ||||||| || |              | |||||||||||    
T  6077880 tcctctttatctttggatgaaacgtctctcttgcaattgtaatttggaacgt-----ctctcattttctttcgtttttttgttttttgccctgagaagaa 6077786  T
Q  289 aaacaatagagccgctcaatcctcaattctcattagcaattgtaaaatagaaagagagtgaaactgccataa 360  Q
    |||||||||| | | ||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  6077785 aaacaatagaactggtcaatcctcaattctcatttgcaattgtcaaatagaaagagagagaaactgccataa 6077714  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 22157926 - 22157965
Alignment:
Q  290 aacaatagagccgctcaatcctcaattctcattagcaatt 329  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  22157926 aacaatagaaccgctcattcctcaattctcattagcaatt 22157965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 9765900 - 9765844
Alignment:
Q  185 cctgtcatgtttttctctttatgtgtggatgaaacgtctcttgcaattgtaatttgga 242  Q
    ||||||||||||  |||| ||| | ||||||||| |||||||||||||||||||||||    
T  9765900 cctgtcatgtttc-ctctctatctttggatgaaatgtctcttgcaattgtaatttgga 9765844  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 435
Target Start/End: Original strand, 13550309 - 13550528
Alignment:
Q  210 tggatgaaacgtctcttgcaattgtaatttggaacgtccatactcccattttcattggnnnnnnnngtcctgagaagaaaaacaatagagccgctcaatc 309  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||        |||||||      |||||||||| || |||||||    
T  13550309 tggatgaaacgtctcttgtaattgtaatttggaacgtccctgctcccattttcattggttttttt-gtcctga------aaacaatagaacccctcaatc 13550401  T
Q  310 ctcaattctcattagcaattgtaaaatagaa--agagagtgaaactgccat-aatcaccctgttaaagcatactcatgtgannnnnnnnncaaaagaaga 406  Q
    |||||||||||||||||||| |  |||||||  |||||| ||||||| ||| ||||||||||||||| |||||||||||||          |||||||||    
T  13550402 ctcaattctcattagcaattttccaatagaaagagagagagaaactgtcataaatcaccctgttaaaacatactcatgtgatttttttg--aaaagaaga 13550499  T
Q  407 ttcatgaggctaacaaaataagataaaaa 435  Q
    ||||||| | ||| |||||||||||||||    
T  13550500 ttcatgaagttaataaaataagataaaaa 13550528  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 13550247 - 13550308
Alignment:
Q  81 aaagtatgcacccattgttgtcaattggatgaaatgtatatttctctttgttccaaaataaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13550247 aaagtatgcacccattgttgtcaattggatgaaatgtatatttctctttgttctaaaataaa 13550308  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 330
Target Start/End: Original strand, 43651610 - 43651750
Alignment:
Q  185 cctgtcatgtttttctctttatgtgtggatgaaacgtctcttgcaattgtaatttggaacgtccatactcccattttcattggnnnnnnnngtcctgaga 284  Q
    ||||||||||||  |||| ||| | ||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| |||         ||| ||| |    
T  43651610 cctgtcatgtttc-ctctctatctttggatgaaatgtctcttgcaattgtaatttgga-cgtccctgctcccattttc-ttg--attctttgtcttgaaa 43651704  T
Q  285 agaaaaacaatagagccgctcaatcctcaattctcattagcaattg 330  Q
    |||||||||||||| | | |||||||||||||||||||||||||||    
T  43651705 agaaaaacaatagaactgttcaatcctcaattctcattagcaattg 43651750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 330
Target Start/End: Original strand, 21114819 - 21114959
Alignment:
Q  185 cctgtcatgtttttctctttatgtgtggatgaaacgtctcttgcaattgtaatttggaacgtccatactcccattttcattggnnnnnnnngtcctgaga 284  Q
    ||||||||||||  |||| ||| | ||||||||| ||||||||||||||||||||||| ||||| | ||||||||||| |||         ||| ||| |    
T  21114819 cctgtcatgtttc-ctctctatctttggatgaaatgtctcttgcaattgtaatttgga-cgtccctgctcccattttc-ttg--attctttgtcttgaaa 21114913  T
Q  285 agaaaaacaatagagccgctcaatcctcaattctcattagcaattg 330  Q
    |||||||||||||| | | |||||||||||||||||||||||||||    
T  21114914 agaaaaacaatagaactgttcaatcctcaattctcattagcaattg 21114959  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 7807628 - 7807676
Alignment:
Q  280 tgagaagaaaaacaatagagccgctcaatcctcaattctcattagcaat 328  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  7807628 tgagaagaaaaacaatagtaccgctcaatcctcaattcttattagcaat 7807676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 39482432 - 39482516
Alignment:
Q  175 ttggtgaaaccctgtcatgtttttctctttatgtgtggatgaaacgtctcttgcaattgtaatttggaacgtccatactcccattt 260  Q
    ||||| ||||||||||||||||  || | ||  | | ||||||| ||||||| ||||||||||||||||||||| | |||||||||    
T  39482432 ttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctctt-caattgtaatttggaacgtccctgctcccattt 39482516  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 24867920 - 24867958
Alignment:
Q  397 caaaagaagattcatgaggctaacaaaataagataaaaa 435  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  24867920 caaaagaagattcatgaagttaacaaaataagataaaaa 24867958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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