View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_22 (Length: 443)

Name: NF1166_low_22
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_22
NF1166_low_22
[»] chr3 (2 HSPs)
chr3 (30-435)||(45729121-45729526)
chr3 (30-376)||(45724991-45725337)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 30 - 435
Target Start/End: Complemental strand, 45729526 - 45729121
Alignment:
Q  30 aagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaagaaaataggaggttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45729526 aagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaagaaaataggaggttt 45729427  T
Q  130 catggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattgcgagg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45729426 catggagattatatttagtttttctggggcgatggagatggttgtcaatggtggaggatggtggtggagacggtggcgtttgatgtatgagattgcgagg 45729327  T
Q  230 ggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggagcac 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45729326 ggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggagcac 45729227  T
Q  330 tgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttcannnnnnnctctgcaacttgttttttaccatcttccatgtgtgtgtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  45729226 tgcaggtacctagggataatatgagacaatttactacgagaaggaatctcttcatttttttctctgcaacttgttttttaccatcttccatgtgtgtgtt 45729127  T
Q  430 catctc 435  Q
    | ||||    
T  45729126 cttctc 45729121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 30 - 376
Target Start/End: Complemental strand, 45725337 - 45724991
Alignment:
Q  30 aagtggaaactggaagccgagcaacgccatatgcgaagagatagtcgtcaaggccggtgaggattccgatgaaggcagctgcgaagaaaataggaggttt 129  Q
    |||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||  ||||| ||||| ||||||||||| |||||    
T  45725337 aagtggaaaccggaagccgagcaacgccatatgcgtagagataatcgtcaagaccggtgaggattccgacaaaggcggctgcaaagaaaataggtggttt 45725238  T
Q  130 catggagattatatttagtttttctggggcgatggagatggttgtcgatggtggaggatgggggtggagacggtggcgtttgatgtatgagattgcgagg 229  Q
    |||||||||||||||| ||||||||| |||||||||||||||  | ||||||  ||| | | || || |||||   |||| |||||||||||||| ||||    
T  45725237 catggagattatattttgtttttctgaggcgatggagatggtgttggatggtaaaggtttgtggcggtgacggaaacgttggatgtatgagattgtgagg 45725138  T
Q  230 ggaatgagcatcaaggggaaaccggcggtttggaggaaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattatgaggggagcac 329  Q
    |||||||||||||||||||||||||| ||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  45725137 ggaatgagcatcaaggggaaaccggcagtttccaggcaggcggagagccagacacgttggccgccgtggatgaaatagagacgcattattaggggaccac 45725038  T
Q  330 tgcaggtacctagggataatatgagacaatttactacgagaaggaat 376  Q
     | || ||||||||| |||||| |||||||||||||  |||||||||    
T  45725037 cggagttacctagggctaatatcagacaatttactatcagaaggaat 45724991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University