View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_24 (Length: 438)

Name: NF1166_low_24
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_24
NF1166_low_24
[»] chr3 (3 HSPs)
chr3 (30-376)||(12277381-12277727)
chr3 (259-367)||(23210030-23210136)
chr3 (259-374)||(52689251-52689366)
[»] chr6 (3 HSPs)
chr6 (259-374)||(9578891-9579008)
chr6 (259-317)||(14744101-14744159)
chr6 (154-266)||(19415291-19415403)
[»] chr7 (1 HSPs)
chr7 (275-374)||(24772261-24772360)
[»] chr4 (4 HSPs)
chr4 (263-374)||(51970319-51970432)
chr4 (259-370)||(18902896-18903006)
chr4 (259-317)||(24599640-24599698)
chr4 (206-266)||(8716943-8717003)
[»] chr5 (1 HSPs)
chr5 (259-371)||(23282864-23282977)
[»] chr1 (4 HSPs)
chr1 (259-317)||(49382509-49382568)
chr1 (259-312)||(24536174-24536225)
chr1 (217-266)||(13800749-13800798)
chr1 (213-266)||(27659374-27659427)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 30 - 376
Target Start/End: Complemental strand, 12277727 - 12277381
Alignment:
Q  30 ttagggggtgcacataggtttctatctgtgttctatgcatgacaagttttgaatattcatcctgtctttttctcactagctcgtttactttgagggattg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12277727 ttagggggtgcacataggtttctatctgtgttctatgcatgacaagttttgaatattcatcctgtctttttctcactagctcgtttactttgagggattg 12277628  T
Q  130 tttggtaagaccaacaagctagtttataacttataagtacgtatgtctcaaaaagttccgttttataaacgtcatattatcaggaacttatagcgtattt 229  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12277627 tttggtaagaccaacaagctagtttataacttataagcacgtatgtctcaaaaagttccgttttataaacgtcatattatcaggaacttatagcgtattt 12277528  T
Q  230 aaggagtttatagtttatttttcagatgctatttcaatttgtttttaatttctatgtgagaattgatttaacctttttgtgtgaaactgagcattttttc 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12277527 aaggagtttatagtttatttttcagatgctatttcaatttgtttttaatttctatgtgagaattgatttaacctttttgtgtgaaactgagcattttttc 12277428  T
Q  330 ttgaaaaaattcatcacttctttgttcagtaatttctttatatgtat 376  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  12277427 ttgaaaaaattcatcacttctctattcagtaatttctttatatgtat 12277381  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 259 - 367
Target Start/End: Complemental strand, 23210136 - 23210030
Alignment:
Q  259 tatttcaatttgtttttaatttctatgtgagaattgatttaacctttttgtgtgaaactgagcattttttcttgaaaaaattcatcacttctttgttcag 358  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| | |||||    
T  23210136 tatttcaatttgtttttaatttctatgtgggaattgatttaatctttttgtgtgaaactgag-aatttttcttg-aaaaattcatcacttctctattcag 23210039  T
Q  359 taatttctt 367  Q
    |||||||||    
T  23210038 taatttctt 23210030  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 259 - 374
Target Start/End: Complemental strand, 52689366 - 52689251
Alignment:
Q  259 tatttcaatttgtttttaatttctatgtgagaattgatttaacctttttgtgtgaaactgagcattttttcttgaaaaaattcatcacttctttgttcag 358  Q
    |||| ||||||||||||| ||||||||||  |||||||||||  ||| |||||||||||||| ||||||||||||||||||| ||||| | | |||||||    
T  52689366 tattccaatttgtttttagtttctatgtggaaattgatttaatttttatgtgtgaaactgagaattttttcttgaaaaaattaatcacctttatgttcag 52689267  T
Q  359 taatttctttatatgt 374  Q
    |||||| |||||||||    
T  52689266 taatttatttatatgt 52689251  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 259 - 374
Target Start/End: Original strand, 9578891 - 9579008
Alignment:
Q  259 tatttcaattt-gtttttaatttctatgtgagaattgatttaacctttttgtgtgaaactgagcattttttcttgaaaaaattcatcacttct-ttgttc 356  Q
    ||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||| |||| || |||    
T  9578891 tatttcaattttgtttctaatttctatgtgggaattgatttaatctttttgtgtgaaactgagaattttttattgaaaagattcatcatttctcttattc 9578990  T
Q  357 agtaatttctttatatgt 374  Q
    ||||||||||||||||||    
T  9578991 agtaatttctttatatgt 9579008  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 14744101 - 14744159
Alignment:
Q  259 tatttcaatttgtttttaatttctatgtgagaattgatttaacctttttgtgtgaaact 317  Q
    ||||||||||| ||| |||||||||||||  ||||||||||| |||||||||| |||||    
T  14744101 tatttcaatttttttctaatttctatgtggaaattgatttaatctttttgtgtaaaact 14744159  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 19415291 - 19415403
Alignment:
Q  154 tataacttataagtacgtatgtctcaaaaagttccgttttataaacgtcatattatcaggaacttatagcgtatttaaggagtttatagtttatttttca 253  Q
    |||| ||||||||  ||||||||  |||||| |||||||  |||||||| | || |||| | |||||||||| ||| | ||| || | | ||||||||||    
T  19415291 tatagcttataagctcgtatgtccaaaaaagctccgtttggtaaacgtcttcttgtcagaagcttatagcgtttttcacgagcttgttgcttatttttca 19415390  T
Q  254 gatgctatttcaa 266  Q
    || ||||||||||    
T  19415391 gacgctatttcaa 19415403  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 24772360 - 24772261
Alignment:
Q  275 taatttctatgtgagaattgatttaacctttttgtgtgaaactgagcattttttcttgaaaaaattcatcacttctttgttcagtaatttctttatatgt 374  Q
    ||||||||||||| ||||| |||||| || ||||||||||||||||  |||||||| |||||||||||||| |||| |||||| ||||||||||||||||    
T  24772360 taatttctatgtgggaatttatttaatctctttgtgtgaaactgagagttttttctagaaaaaattcatcatttctatgttcattaatttctttatatgt 24772261  T

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Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 263 - 374
Target Start/End: Original strand, 51970319 - 51970432
Alignment:
Q  263 tcaatttgtttttaatttctatgtgagaattgatttaacctttttgtgtgaaactgagcattttttcttgaaaaaa--ttcatcacttctttgttcagta 360  Q
    ||||||||||| | |||||||||||  ||||||||||| ||||| |||||||||||||  |||||| || ||||||  ||| ||||||||||||||||||    
T  51970319 tcaatttgtttcttatttctatgtggaaattgatttaatcttttggtgtgaaactgagattttttttttaaaaaaaaattcttcacttctttgttcagta 51970418  T
Q  361 atttctttatatgt 374  Q
    ||||||||||||||    
T  51970419 atttctttatatgt 51970432  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 259 - 370
Target Start/End: Original strand, 18902896 - 18903006
Alignment:
Q  259 tatttcaatttgtttttaatttctatgtgagaattgatttaacctttttgtgtgaaactgagcattttttcttgaaaaaattcatcacttctttgttcag 358  Q
    ||||||||||||||| ||||||||||||  || ||||||||| |||||||| |||||||||| | |||||||||||||| ||||| |||| | ||||| |    
T  18902896 tatttcaatttgtttctaatttctatgtaggagttgatttaatctttttgtttgaaactgag-aatttttcttgaaaaagttcattacttgtctgttcgg 18902994  T
Q  359 taatttctttat 370  Q
    ||||||||||||    
T  18902995 taatttctttat 18903006  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 24599640 - 24599698
Alignment:
Q  259 tatttcaatttgtttttaatttctatgtgagaattgatttaacctttttgtgtgaaact 317  Q
    ||||||||||||||| || ||||||| || |||||||||||| ||||||||||||||||    
T  24599640 tatttcaatttgtttctactttctatatgggaattgatttaatctttttgtgtgaaact 24599698  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 8717003 - 8716943
Alignment:
Q  206 ttatcaggaacttatagcgtatttaaggagtttatagtttatttttcagatgctatttcaa 266  Q
    |||| ||||||||||||| ||||| |  || |||||||||||||| |||| ||||||||||    
T  8717003 ttataaggaacttatagcttatttcaaaagcttatagtttattttccagaggctatttcaa 8716943  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 371
Target Start/End: Complemental strand, 23282977 - 23282864
Alignment:
Q  259 tatttcaatttgtttttaatttctatgtgagaattgatttaaccttttt-gtgtgaaactgagcattttttcttgaaaaaattcatcacttctttgttca 357  Q
    ||||||||||| ||| ||||||||||||  |||||||||||| |||||| ||||||||||| | ||||||||||||||   || |||| |||||||||||    
T  23282977 tatttcaatttttttctaatttctatgtaggaattgatttaatcttttttgtgtgaaactgtgaattttttcttgaaattttttatcatttctttgttca 23282878  T
Q  358 gtaatttctttata 371  Q
    ||||||||||||||    
T  23282877 gtaatttctttata 23282864  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 49382509 - 49382568
Alignment:
Q  259 tatttcaatttgtttttaatttctatgtgagaattgatttaa-cctttttgtgtgaaact 317  Q
    |||||||||||||||||||||| ||| || |||||||||||| | |||||||||||||||    
T  49382509 tatttcaatttgtttttaatttttatttgggaattgatttaatcttttttgtgtgaaact 49382568  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 24536225 - 24536174
Alignment:
Q  259 tatttcaatttgtttttaatttctatgtgagaattgatttaacctttttgtgtg 312  Q
    ||||||||||||||| ||| |||| |||||||||||||||||  ||||||||||    
T  24536225 tatttcaatttgtttctaacttctttgtgagaattgatttaa--tttttgtgtg 24536174  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 13800749 - 13800798
Alignment:
Q  217 ttatagcgtatttaaggagtttatagtttatttttcagatgctatttcaa 266  Q
    |||||| |||||| | ||||||| ||| ||||||||||||||||||||||    
T  13800749 ttatagtgtatttcatgagtttacagtatatttttcagatgctatttcaa 13800798  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 27659427 - 27659374
Alignment:
Q  213 gaacttatagcgtatttaaggagtttatagtttatttttcagatgctatttcaa 266  Q
    ||||||||| | ||||| |||||||||||||||||||| || | ||||||||||    
T  27659427 gaacttataacttatttcaggagtttatagtttattttccaaacgctatttcaa 27659374  T

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