View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_25 (Length: 436)
Name: NF1166_low_25
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 426
Target Start/End: Complemental strand, 39983955 - 39983576
Alignment:
| Q |
29 |
attccggtcagggataataaaaataataatattcacctgtgagaatttggttttcagacttctagtccaatcaccaagtattttaatatgaacactaagg |
128 |
Q |
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| T |
39983955 |
attccggtcagcgataatattaataataatattcacctgtgagaatttggttttcagacttctagtccaatcaccaagtattttaatatgaacactaagg |
39983856 |
T |
|
| Q |
129 |
taatcatcattaggggcagaagttatggaaaatggatgcctgtgaatgcataaacaatgaatgaaggtatagaaatcagataaatgtgaagtaaaaatag |
228 |
Q |
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| T |
39983855 |
taatcatcattaggggcagaagttatggaaaatggatgcctgtgaatgcataaacaatgaatgaaggtatagaaatcagataaatgtgaagta------- |
39983763 |
T |
|
| Q |
229 |
aaaaacggatgtagctcaagcttatatgattctctaattagatgccacatttaatttattatagaatgtttcttcaaaataaatccataccattcaagtg |
328 |
Q |
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| T |
39983762 |
-----------tagctcaagcttatatgatgctctaattagatgccacatttaatttattatagaatgtttcttcaaaataaatccataccattcaagtg |
39983674 |
T |
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| Q |
329 |
gagaaacagcagcacaattgacaagcatgtactgtccactcttatagctaaatccttgaggctttgacatattaattgccaacacatttccagtataa |
426 |
Q |
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| T |
39983673 |
gagaaacagcagcacaattgacaagcatgtactgtccactcttatagctaaatccttgaggctttgacatattaattgccaacacatttccaggataa |
39983576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 316 - 426
Target Start/End: Complemental strand, 44916148 - 44916038
Alignment:
| Q |
316 |
taccattcaagtggagaaacagcagcacaattgacaagcatgtactgtccactcttatagctaaatccttgaggctttgacatattaattgccaacacat |
415 |
Q |
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| T |
44916148 |
taccattcaaatggagagacagcagcacaatttacaaacatgtattgtccactcttgtatctaaacccctgaggctttgacatatgaagagccaacacat |
44916049 |
T |
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| Q |
416 |
ttccagtataa |
426 |
Q |
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|||||| |||| |
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| T |
44916048 |
ttccaggataa |
44916038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 421
Target Start/End: Complemental strand, 44899925 - 44899820
Alignment:
| Q |
316 |
taccattcaagtggagaaacagcagcacaattgacaagcatgtactgtccactcttatagctaaatccttgaggctttgacatattaattgccaacacat |
415 |
Q |
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|||||||||| |||||| |||||||||||||| |||| |||||| ||||| ||||| || ||||| || | ||| ||||||| || || || ||||||| |
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| T |
44899925 |
taccattcaaatggagagacagcagcacaatttacaaacatgtattgtccgctcttgtatctaaacccctcaggttttgacacatgaagagctaacacat |
44899826 |
T |
|
| Q |
416 |
ttccag |
421 |
Q |
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|||||| |
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| T |
44899825 |
ttccag |
44899820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 44900048 - 44900003
Alignment:
| Q |
141 |
ggggcagaagttatggaaaatggatgcctgtgaatgcataaacaat |
186 |
Q |
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| T |
44900048 |
ggggcggaggttatagaaaatggatgcctgtgaaagcataaacaat |
44900003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 44916361 - 44916249
Alignment:
| Q |
62 |
cacctgtgagaatttggttttcagacttctagtccaatcaccaagtattttaatatgaacactaaggtaatcatcattaggggcagaagttatggaaaat |
161 |
Q |
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||||| |||||||||| | | |||||||| ||||| ||||| | | || | || |||||||||||||| ||||| |||| ||| ||||||||||| |
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| T |
44916361 |
cacctctgagaatttgactctgagacttctggtccagtcacctaatgttctgatgtgaacactaaggtagtcatctcctggggaagaggttatggaaaac |
44916262 |
T |
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| Q |
162 |
ggatgcctgtgaa |
174 |
Q |
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||||||||||||| |
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| T |
44916261 |
ggatgcctgtgaa |
44916249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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