View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1166_low_26 (Length: 421)
Name: NF1166_low_26
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 401
Target Start/End: Original strand, 26576651 - 26577003
Alignment:
| Q |
30 |
ctagttgtaccaaaccaggttgtccggatagttgtacctatcctcatgttctgacatgcattggtaataattgtgcttgtacttaacagtaagttgacac |
129 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
26576651 |
ctagttgtaccacacgaggttgtccggatagttgtgcctatcctcatgttctgagatgcattggtaaaaattgtgtttgtacttaacagtaagttgacac |
26576750 |
T |
|
| Q |
130 |
aacaattcgttacttttaaacttatacttttatttcatcgagttgttactcatattacttctttgcatgattctaattttctctctaacattcaaatttc |
229 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26576751 |
aacaatttgttacttttaaacttatacttttatttcaacgagttgttactcatattacttctttgcatgattctaattttctctctaacattcaaatttc |
26576850 |
T |
|
| Q |
230 |
ttgcacaggctgagaataaaaatggcattgcagaattataaatgaactgcaataaataaagataacatgatttaaaaccatgtcgccttttgtggaaggg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
26576851 |
ttgcacaggctgagaataaaaatggcattgcagaattataaatgaactgcaataaataaagatgacatggttt-------------------tggaaggg |
26576931 |
T |
|
| Q |
330 |
gaggtgtgtctagcttgttgtagtttttgagttgtatctctatgctttagaaaatttgtatttgtttttagt |
401 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26576932 |
gaggtgtgtctagcttgtggtagtttttgagttgtatctctatgctttagaaaatttgtatttgtttttagt |
26577003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 83 - 300
Target Start/End: Original strand, 26584609 - 26584826
Alignment:
| Q |
83 |
acatgcattggtaataattgtgcttgtacttaacagtaagttgacacaacaattcgttacttttaaacttatacttttatttcatcgagttgttactcat |
182 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||| ||||||||| |||| |||| ||||||||||||||||||||||||||||| |||||| || | || |
|
|
| T |
26584609 |
acatgcattgataataattgtttttgtatttaatcgtaagttgatacaaaaatttgttacttttaaacttatacttttatttcaatgagttgatatttat |
26584708 |
T |
|
| Q |
183 |
attacttctttgcatgattctaattttctctctaacattcaaatttcttgcacaggctgagaataaaaatggcattgcagaattataaatgaactgcaat |
282 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||| ||||||| |||||| ||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
26584709 |
attacttcattgcacatttctatttttctctctaacattaaaatttccatgtcaggcttagaataaaagtgtcattgcagaattataaatgaactgcaat |
26584808 |
T |
|
| Q |
283 |
aaataaagataacatgat |
300 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
26584809 |
aaataaagataacgtgat |
26584826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 26571255 - 26571343
Alignment:
| Q |
206 |
ttttctctctaacattcaaatttcttgcacaggctgagaataaaaatggcattgcagaattataaatgaactgcaataaataaagataa |
294 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26571255 |
ttttctctttaacattcaaatttcttggacaggtcgagaataaaaatatcattgcagaattataaatgaactgcaataaataatgataa |
26571343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 26571120 - 26571222
Alignment:
| Q |
34 |
ttgtaccaaaccaggttgtccggatagttgtacctatcctcatgttctgacatgcattggtaataattgtgcttgtacttaacagtaagttgacacaaca |
133 |
Q |
| |
|
||||||| |||||| ||||| |||| |||| ||| |||| |||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
26571120 |
ttgtaccttaccaggctgtccagatatttgttcctttcctgatgttccgacatgcattgataataattgtttttgtacttaacagtaagttgaaacaaca |
26571219 |
T |
|
| Q |
134 |
att |
136 |
Q |
| |
|
||| |
|
|
| T |
26571220 |
att |
26571222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 26584856 - 26584901
Alignment:
| Q |
354 |
ttttgagttgtatctctatgctttagaaaatttgtatttgttttta |
399 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
26584856 |
ttttgagttgtatctcactgctttagcaaatttgtatttgttttta |
26584901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University