View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_29 (Length: 404)
Name: NF1166_low_29
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 94 - 393
Target Start/End: Complemental strand, 36333037 - 36332741
Alignment:
| Q |
94 |
tgctgctgatatttgattctgtgatgaagaggctgttcttatagcagcagaagcatcattggatattatcatcttctgttgttgtagctgaagattctgc |
193 |
Q |
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| T |
36333037 |
tgctgctgatatttgattctgtgatgaagaggctgttcttatagcagcagaagcatcattggatattatcatcttctgttgttgtagctgaagattctgc |
36332938 |
T |
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| Q |
194 |
tgatccatattattattattatgatctgatgaaaaagaagatgcttttttactacttaagggtgattctggctcaaaagggttctcatttttgcttgata |
293 |
Q |
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| T |
36332937 |
tgatccatattattattat---gatctgatgaaaaagaagatgcttttttactacttaagggtgattctggctcaaaagggttctcatttttgcttgata |
36332841 |
T |
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| Q |
294 |
gtgctgaatcactgctttcacctcctgatttgttaccacctccctgtatttccaaatacaaatcattagtatattcaaatatataatttaatcggttcat |
393 |
Q |
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| T |
36332840 |
gtgctgaatcactgctttcacctcctgatttgttaccacctccctgtatttccaaatacaaatcattagtatattcaaatatataatttaatcggctcat |
36332741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 36333285 - 36333200
Alignment:
| Q |
7 |
ctatcatgttttcatgtcagaaaatcgttcaggaatcaggaaaactctctgttgttttgattttctgaaatctgttgggatctgtg |
92 |
Q |
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| T |
36333285 |
ctatcatgttttcatgtcagaaaatcgttcaggaatcaggaaaactctctgttgttttgattttctgaaatctgttgggatctgtg |
36333200 |
T |
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