View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_36 (Length: 390)

Name: NF1166_low_36
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_36
NF1166_low_36
[»] chr7 (3 HSPs)
chr7 (1-378)||(28070735-28071112)
chr7 (54-160)||(40491666-40491772)
chr7 (101-140)||(40367293-40367332)
[»] chr2 (8 HSPs)
chr2 (57-160)||(1763264-1763367)
chr2 (57-160)||(12110918-12111021)
chr2 (63-160)||(11759750-11759847)
chr2 (82-137)||(16013617-16013672)
chr2 (82-136)||(6948471-6948525)
chr2 (55-135)||(6767764-6767844)
chr2 (101-137)||(7630540-7630576)
chr2 (102-158)||(7741039-7741095)
[»] chr8 (7 HSPs)
chr8 (74-160)||(36779451-36779537)
chr8 (54-137)||(10368053-10368136)
chr8 (105-137)||(23979462-23979494)
chr8 (105-160)||(14520241-14520296)
chr8 (101-160)||(35550308-35550367)
chr8 (101-160)||(41408277-41408336)
chr8 (101-160)||(41891782-41891841)
[»] chr4 (6 HSPs)
chr4 (55-135)||(33560487-33560566)
chr4 (101-160)||(5025593-5025652)
chr4 (102-160)||(24370578-24370636)
chr4 (80-160)||(5835793-5835873)
chr4 (106-164)||(17897795-17897853)
chr4 (56-137)||(38740288-38740369)
[»] chr1 (6 HSPs)
chr1 (93-165)||(22548185-22548257)
chr1 (101-159)||(41614430-41614488)
chr1 (55-165)||(213167-213277)
chr1 (106-160)||(43541585-43541639)
chr1 (102-160)||(45557437-45557495)
chr1 (53-117)||(18325323-18325387)
[»] scaffold0172 (1 HSPs)
scaffold0172 (57-160)||(15220-15323)
[»] chr5 (3 HSPs)
chr5 (54-135)||(29922988-29923069)
chr5 (102-137)||(33245189-33245224)
chr5 (106-160)||(35591042-35591096)
[»] chr3 (9 HSPs)
chr3 (54-123)||(1441335-1441404)
chr3 (60-160)||(24916578-24916678)
chr3 (81-160)||(27825270-27825349)
chr3 (74-137)||(30958145-30958208)
chr3 (74-137)||(30973957-30974020)
chr3 (100-162)||(1227578-1227640)
chr3 (57-123)||(52925551-52925617)
chr3 (101-137)||(49158655-49158691)
chr3 (80-160)||(53567990-53568070)
[»] chr6 (1 HSPs)
chr6 (103-160)||(10054955-10055012)


Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 28070735 - 28071112
Alignment:
Q  1 cttcaagcatgattttcacacgcagatgtattgttcaacacatcaactcacaaaatgtatctaaacagaaaccacttgacattcaactcaatttcagtcg 100  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28070735 cttcaagcatgattttcacacgcaaatgtattgttcaacacttcaactcacaaaatgtatctaaacagaaaccacttgacattcaactcaatttcagttg 28070834  T
Q  101 aaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaacaaacaatgagtgctgcattggtctgaatctcgctatgtgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28070835 aaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaacaaacaatgagtgctgcattggtctgaatctcgctatgtgca 28070934  T
Q  201 tgcttcatcagatgtattaatcatcattcatcactatttccttaactcctccatgtccatatagtttgaacttacggccggaatttatttgctatctaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28070935 tgcttcatcagatgtattaatcatcattcatcactatttccttaactcctccatgtccatatagtttgaacttacggccggaatttatttgctatctaag 28071034  T
Q  301 tgcataagaccaaattgctgctaactatttttgaattatttttaacatcccttgaaaattttgattgcagcttatatt 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28071035 tgcataagaccaaattgctgctaactatttttgaattatttttaacatcccttgaaaattttgattgcagcttatatt 28071112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 40491666 - 40491772
Alignment:
Q  54 aatgtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataa 153  Q
    |||||||| ||| | ||| ||||| || ||||||||| ||| |||| |||||||||||||| ||| |||| | |||||||||||  | ||||||||| ||    
T  40491666 aatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaattcttgtcaccgcagaa 40491765  T
Q  154 ccaaaca 160  Q
    |||||||    
T  40491766 ccaaaca 40491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 40367332 - 40367293
Alignment:
Q  101 aaatcaattttacaaaattaattaattcaaaatcaatatt 140  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  40367332 aaattaattttacaaaattaattaattcaaaatcaatatt 40367293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 1763264 - 1763367
Alignment:
Q  57 gtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataacca 156  Q
    ||||||||||| ||| ||||| | |||||||||||||| |  | |||||||||||||||||| ||||   |||||||||||  ||||||||||| |||||    
T  1763264 gtatctaaacataaatcactttaaattcaactcaattttaaccaaaatcaattttacaaaatcaattttatcaaaatcaattctcgtcaccgcacaacca 1763363  T
Q  157 aaca 160  Q
    ||||    
T  1763364 aaca 1763367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 12110918 - 12111021
Alignment:
Q  57 gtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataacca 156  Q
    ||||| ||||| ||| ||||| | |||||||||| ||| |  | |||||||||| ||||||| ||||   ||||||||||| |||||||||||| |||||    
T  12110918 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcacaacca 12111017  T
Q  157 aaca 160  Q
    ||||    
T  12111018 aaca 12111021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 11759847 - 11759750
Alignment:
Q  63 aaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    ||||| |||||| || || ||||||||| ||| | || |||||||||||||||||| |||| | ||||| ||||| ||  ||||| ||||||||||||    
T  11759847 aaacacaaaccaatttaccttcaactcacttttaatcaaaatcaattttacaaaatcaattcactcaaactcaatttttttcacctcataaccaaaca 11759750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 16013672 - 16013617
Alignment:
Q  82 ttcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaat 137  Q
    |||||||||||||| | || |||||||||| ||||| ||||| |||||||||||||    
T  16013672 ttcaactcaatttctgccggaatcaattttccaaaactaattcattcaaaatcaat 16013617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 6948525 - 6948471
Alignment:
Q  82 ttcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaa 136  Q
    ||||||||||||||| || |||||||||||||| ||  |||| ||||||||||||    
T  6948525 ttcaactcaatttcaatcaaaatcaattttacataaccaattcattcaaaatcaa 6948471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 6767764 - 6767844
Alignment:
Q  55 atgtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatca 135  Q
    |||||| |||||  ||| ||||| |||||||||||| ||| | ||  ||||||||||||||||| | || |||||||||||    
T  6767764 atgtatataaacgtaaatcactttacattcaactcatttttaatcacaatcaattttacaaaatcagtttattcaaaatca 6767844  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 7630540 - 7630576
Alignment:
Q  101 aaatcaattttacaaaattaattaattcaaaatcaat 137  Q
    |||||||||||||||||| |||| |||||||||||||    
T  7630540 aaatcaattttacaaaatcaattcattcaaaatcaat 7630576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 7741095 - 7741039
Alignment:
Q  102 aatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaa 158  Q
    ||||||||||| | |||||||| ||||||||||||  || |||||| ||||||||||    
T  7741095 aatcaattttatagaattaattcattcaaaatcaacttttgtcacctcataaccaaa 7741039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 36779451 - 36779537
Alignment:
Q  74 acttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    |||| |||||||||||| ||| | || ||||||||| |||||||| |||||  |||||||||||  ||||||||||| |||||||||    
T  36779451 actttacattcaactcacttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaattctcgtcaccgcacaaccaaaca 36779537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 10368053 - 10368136
Alignment:
Q  54 aatgtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaat 137  Q
    |||||||||||||| ||| ||||| || ||||||||| ||| | || |||||||||||||||||  |||| | |||||||||||    
T  10368053 aatgtatctaaacacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatcaat 10368136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 23979462 - 23979494
Alignment:
Q  105 caattttacaaaattaattaattcaaaatcaat 137  Q
    |||||||||||||||||||||||||||||||||    
T  23979462 caattttacaaaattaattaattcaaaatcaat 23979494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 14520241 - 14520296
Alignment:
Q  105 caattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    |||||||| |||||||||| | ||||||||||| |||| ||||||| |||||||||    
T  14520241 caattttataaaattaattcagtcaaaatcaattttcggcaccgcaaaaccaaaca 14520296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 35550308 - 35550367
Alignment:
Q  101 aaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    |||||||||||||||||| |||| | ||||||||||| |||| ||||||| || ||||||    
T  35550308 aaatcaattttacaaaatcaattcaatcaaaatcaattttcgccaccgcaaaatcaaaca 35550367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 41408277 - 41408336
Alignment:
Q  101 aaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    ||||||||| ||||||||||||| | ||||||||||| ||  |||||| |||||||||||    
T  41408277 aaatcaattctacaaaattaattcaatcaaaatcaattttaatcaccgtataaccaaaca 41408336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 41891841 - 41891782
Alignment:
Q  101 aaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    ||||||||| |||||||| |||| | ||||||| ||| || |||||||||||||||||||    
T  41891841 aaatcaattctacaaaatcaattcaatcaaaattaattttagtcaccgcataaccaaaca 41891782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 33560566 - 33560487
Alignment:
Q  55 atgtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatca 135  Q
    ||||||||||||| |||||| || |||||||||||| |||||  | ||||| ||||||| ||||||||| |||||||||||    
T  33560566 atgtatctaaacataaaccaatttacattcaactcactttcaagc-aaatccattttacgaaattaattcattcaaaatca 33560487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 5025593 - 5025652
Alignment:
Q  101 aaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    ||||||||| |||||||| |||| | ||||||||||| || |||||||||||||||||||    
T  5025593 aaatcaattctacaaaatcaattcaatcaaaatcaattttagtcaccgcataaccaaaca 5025652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 24370578 - 24370636
Alignment:
Q  102 aatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    ||||||||||||||||| |||||||||||||||||  || |||||| ||||| ||||||    
T  24370578 aatcaattttacaaaatcaattaattcaaaatcaacttttgtcaccacataatcaaaca 24370636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 5835793 - 5835873
Alignment:
Q  80 cattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    ||||||| ||| ||| | || ||||||||| |||||||| |||| | ||||||||||| ||||||||  ||||||||||||    
T  5835793 cattcaattcagttttaatcaaaatcaattctacaaaatcaattcaatcaaaatcaattttcgtcacaacataaccaaaca 5835873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 17897853 - 17897795
Alignment:
Q  106 aattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaacaaaca 164  Q
    ||||| ||||||| |||| | ||||||||||| || ||||||||| |||||||||||||    
T  17897853 aatttgacaaaatcaattcactcaaaatcaatttttgtcaccgcagaaccaaacaaaca 17897795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 38740369 - 38740288
Alignment:
Q  56 tgtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaat 137  Q
    |||||| ||||| ||| ||||| |  ||||||||| ||| |  | |||||||||||||||||| |||| |||||||||||||    
T  38740369 tgtatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaat 38740288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 22548257 - 22548185
Alignment:
Q  93 ttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaacaaacaa 165  Q
    |||||||||||||||||||||||||| |||| | | ||||||||| ||  |||||||| ||||||||| ||||    
T  22548257 ttcagtcgaaatcaattttacaaaatcaattcacttaaaatcaatttttatcaccgcaaaaccaaacatacaa 22548185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 41614430 - 41614488
Alignment:
Q  101 aaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaac 159  Q
    |||||||||||||| |||||||||||||||||| ||| || || || ||||||||||||    
T  41614430 aaatcaattttacataattaattaattcaaaattaatttttgttactgcataaccaaac 41614488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 213277 - 213167
Alignment:
Q  55 atgtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataac 154  Q
    ||||||| ||||| ||| ||||| |||||||| ||    |||||| |||| ||||||| | ||| |||| | ||||||||||| || ||||||||| |||    
T  213277 atgtatccaaacataaatcactttacattcaattcttaatcagtcaaaattaattttatagaatcaatttaatcaaaatcaatttttgtcaccgcagaac 213178  T
Q  155 caaacaaacaa 165  Q
    |||||| ||||    
T  213177 caaacatacaa 213167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 43541639 - 43541585
Alignment:
Q  106 aattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    ||||||||| ||| |||| ||||| ||||||| || |||||||||||||||||||    
T  43541639 aattttacagaatcaattcattcagaatcaatttttgtcaccgcataaccaaaca 43541585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 45557437 - 45557495
Alignment:
Q  102 aatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    ||||||||||||| ||| |||| ||||||||||||| || | ||| |||||||||||||    
T  45557437 aatcaattttacacaatcaatttattcaaaatcaatttttgccacagcataaccaaaca 45557495  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 18325387 - 18325323
Alignment:
Q  53 aaatgtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaa 117  Q
    |||| ||||||||||||||||| || |||||||||||| ||| |    |||||||||||||||||    
T  18325387 aaatttatctaaacagaaaccattttacattcaactcacttttatgtaaaatcaattttacaaaa 18325323  T

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Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 15323 - 15220
Alignment:
Q  57 gtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataacca 156  Q
    ||||| ||||| ||| ||||| | |||||||||| ||| |  | |||||||||| ||||||| ||||   ||||||||||| |||||||||||| |||||    
T  15323 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattttcgtcaccgcacaacca 15224  T
Q  157 aaca 160  Q
    ||||    
T  15223 aaca 15220  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 29922988 - 29923069
Alignment:
Q  54 aatgtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatca 135  Q
    |||||||| ||||| |||  |||| |||||||||||| ||  |||| |||||||||||||| ||| |||| |||||||||||    
T  29922988 aatgtatccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaatca 29923069  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 33245189 - 33245224
Alignment:
Q  102 aatcaattttacaaaattaattaattcaaaatcaat 137  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33245189 aatcagttttacaaaattaattaattcaaaatcaat 33245224  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 35591042 - 35591096
Alignment:
Q  106 aattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    ||||||||||||| ||| |||||||||| ||| || ||| |||||||||||||||    
T  35591042 aattttacaaaatcaatcaattcaaaattaatttttgtcgccgcataaccaaaca 35591096  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 1441404 - 1441335
Alignment:
Q  54 aatgtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaatt 123  Q
    |||||||||||||| ||| ||||| || ||||||||| ||| || |  ||||||||||||||||||||||    
T  1441404 aatgtatctaaacacaaatcactttacgttcaactcacttttagacagaatcaattttacaaaattaatt 1441335  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 24916578 - 24916678
Alignment:
Q  60 tctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaac 159  Q
    |||||||| ||| || || |||||||||||| ||| || |  ||||||||||||||||| || |  |||||||| ||| || ||||||||| ||||||||    
T  24916578 tctaaacataaatcattttacattcaactcacttttagcctgaatcaattttacaaaatcaactcgttcaaaattaatttttgtcaccgcagaaccaaac 24916677  T
Q  160 a 160  Q
    |    
T  24916678 a 24916678  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 27825349 - 27825270
Alignment:
Q  81 attcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    |||||||| | ||| ||||  ||||||||||| ||||| |||| ||||||||||||| |  || ||||||||||||||||    
T  27825349 attcaactaacttttagtcataatcaattttataaaataaattcattcaaaatcaatttgtgttaccgcataaccaaaca 27825270  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 30958145 - 30958208
Alignment:
Q  74 acttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaat 137  Q
    |||| ||||||||||||  || || | |||||||||||||||||| |||| |||||||||||||    
T  30958145 actttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaat 30958208  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 30973957 - 30974020
Alignment:
Q  74 acttgacattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaat 137  Q
    |||| ||||||||||||  || || | |||||||||||||||||| |||| |||||||||||||    
T  30973957 actttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaat 30974020  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 1227640 - 1227578
Alignment:
Q  100 gaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaacaaa 162  Q
    |||| |||||||||||||| || ||||||||||||||| ||  | ||||||||| ||||||||    
T  1227640 gaaaccaattttacaaaatcaactaattcaaaatcaattttttttaccgcataatcaaacaaa 1227578  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 52925617 - 52925551
Alignment:
Q  57 gtatctaaacagaaaccacttgacattcaactcaatttcagtcgaaatcaattttacaaaattaatt 123  Q
    ||||| ||||| ||||||||| || ||||||||||||| |||   ||||||||||||||||| ||||    
T  52925617 gtatccaaacataaaccactttactttcaactcaattttagtgagaatcaattttacaaaatcaatt 52925551  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 49158655 - 49158691
Alignment:
Q  101 aaatcaattttacaaaattaattaattcaaaatcaat 137  Q
    |||||||||||||||||| |||| |||||||||||||    
T  49158655 aaatcaattttacaaaatcaattcattcaaaatcaat 49158691  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 53567990 - 53568070
Alignment:
Q  80 cattcaactcaatttcagtcgaaatcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    ||||||||||| ||| | || |||||||||||  ||||| |||| | ||||||||||| ||| ||| ||||||| ||||||    
T  53567990 cattcaactcacttttaatcaaaatcaattttgtaaaatcaattcactcaaaatcaattttcatcatcgcataatcaaaca 53568070  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 10055012 - 10054955
Alignment:
Q  103 atcaattttacaaaattaattaattcaaaatcaatattcgtcaccgcataaccaaaca 160  Q
    |||||||||||||||  |||| ||||||||||||  || ||||||||| |||||||||    
T  10055012 atcaattttacaaaaccaattcattcaaaatcaacttttgtcaccgcaaaaccaaaca 10054955  T

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