View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_42 (Length: 346)

Name: NF1166_low_42
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_42
NF1166_low_42
[»] chr4 (1 HSPs)
chr4 (13-346)||(50653459-50653793)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 50653793 - 50653459
Alignment:
Q  13 aatataataagggatatgaatcctaaaagatgagatgtaattgtacannnnnnn-aagaaaagttgtactttaatattttttagacaacaatcaacctct 111  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||        |||||||||||||||||||||||||| ||||||||||||||||||    
T  50653793 aatataataagggatatgaatcctaaaagatgacatgtaattctacattttttttaagaaaagttgtactttaatattttt-agacaacaatcaacctct 50653695  T
Q  112 aataactttttcctaccc-tataaaatggcctagcacattatttctagctacaaattaacaatgacaaattttaagcctctaactctttgcttattcctt 210  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50653694 aataactttttcctacccctataaaatggcctagcacattatttctagctacaaattaacaatgacaaattttaagcctctaactctttgcttattcctt 50653595  T
Q  211 caagctattgttatcataatttcattaccaacaatccaaagcagaagtactgatttcccttcaaaggatgaaaaactatcactcatagaaaacacttgcn 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  50653594 caagctattgttatcataatttcattaccaacaatccaaagcagaagtactaatttcccttcaaaggatgaaaaactatcactcatagaaaacacttgca 50653495  T
Q  311 nnnnnncaccaaattacaatgtttgttttcagtctt 346  Q
          ||||||||||||||||||||||||||||||    
T  50653494 aaaaaacaccaaattacaatgtttgttttcagtctt 50653459  T

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