View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_43 (Length: 346)
Name: NF1166_low_43
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 50653795 - 50653459
Alignment:
| Q |
11 |
ataatataataagggatatgaatcctaaaagatgagatgtaattgtacannnnnnn-aagaaaagttgtactttaatattttttagacaacaatcaacct |
109 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50653795 |
ataatataataagggatatgaatcctaaaagatgacatgtaattctacattttttttaagaaaagttgtactttaatattttt-agacaacaatcaacct |
50653697 |
T |
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| Q |
110 |
ctaataactttttcctaccc-tataaaatggcctagcacattatttctagctacaaattaacaatgacaaattttaagcctctaactctttgcttattcc |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50653696 |
ctaataactttttcctacccctataaaatggcctagcacattatttctagctacaaattaacaatgacaaattttaagcctctaactctttgcttattcc |
50653597 |
T |
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| Q |
209 |
ttcaagctattgttatcataatttcattaccaacaatccaaagcagaagtactgatttcccttcaaaggatgaaaaactatcactcatagaaaacacttg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50653596 |
ttcaagctattgttatcataatttcattaccaacaatccaaagcagaagtactaatttcccttcaaaggatgaaaaactatcactcatagaaaacacttg |
50653497 |
T |
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| Q |
309 |
cnnnnnnncaccaaattacaatgtttgttttcagtctt |
346 |
Q |
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| T |
50653496 |
caaaaaaacaccaaattacaatgtttgttttcagtctt |
50653459 |
T |
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