View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_44 (Length: 341)
Name: NF1166_low_44
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 7803991 - 7803796
Alignment:
| Q |
76 |
caaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagagtatgaatcagagttgatggctg |
175 |
Q |
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| T |
7803991 |
caaaggacatcatagcgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagagtatgaataagagttgatggttg |
7803892 |
T |
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| Q |
176 |
ttctggttttctataaggaagtcaaaaggcccttattaattaatgttgtannnnnnnaagcttggaaaacgcatgcttggaacactaaagggttacaaac |
275 |
Q |
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| T |
7803891 |
ttctggttttctagatggaagtcaaaaggccctt----actaatgttgtatttttttatgcttggaaaacgcatgcatggaacactaaagggttacaaac |
7803796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 7833391 - 7833194
Alignment:
| Q |
71 |
agaagcaaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagagtatgaatcagagttgat |
170 |
Q |
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| T |
7833391 |
agaaccaaaggaaataatagtgcatgcatttatattgagtgaattaggttggatgaatgcgccaataggcatgggaaatagagtatgaatcagagttgat |
7833292 |
T |
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| Q |
171 |
ggctgttctggttttctataaggaagtcaaaaggcccttattaattaatgttgtannnnnnnaagcttggaaaacgcatgcttggaacactaaagggtta |
270 |
Q |
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| T |
7833291 |
g---gttctggttttctagatggaagtcaaaaggccatt----attaatgttgtatttttttaagcttggaaaacgcatgcgtggaacagtaaagggtta |
7833199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 7783923 - 7783802
Alignment:
| Q |
76 |
caaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagagtatgaatcagagttgatggctg |
175 |
Q |
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| T |
7783923 |
caaaggacataatagtgtatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagagtatgaataagagttgatggttg |
7783824 |
T |
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| Q |
176 |
ttctggttttctataaggaagt |
197 |
Q |
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| T |
7783823 |
ttctggttttctagatggaagt |
7783802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 17294997 - 17295074
Alignment:
| Q |
76 |
caaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagag |
153 |
Q |
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| T |
17294997 |
caaaggaggtaatagtgcatgtctttacatcgagtgaattaggttggatgaatttgccaacaggcgtgggaaatagag |
17295074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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