View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_46 (Length: 339)
Name: NF1166_low_46
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 37 - 326
Target Start/End: Complemental strand, 1401099 - 1400810
Alignment:
| Q |
37 |
aaagcagtttgattttatttatcttttgtcatagtaataacttatacatgtaaaacttatatgataagcacttaactacattgtttatacagataggaac |
136 |
Q |
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| T |
1401099 |
aaagcagtttgattttatttatcttttgtcatagtagtaacttatacatgtaaaacttatatgataagcacttaactacattgtttatacagataggaac |
1401000 |
T |
|
| Q |
137 |
aaagttcttagaatgacttatatggtaaaactaataggccaggaacatacccggacactctcttcatcacaaagataagcaccagctacaatggtgtcct |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1400999 |
aaagttcttagaatgacttatatggtaaaactaataggccaagaacatacccggacactctcttcatcacaaagataagcaccagctacaatggtgtcct |
1400900 |
T |
|
| Q |
237 |
tcatgtgactctccacggaatctaaagggctaagcacagcacttacaccaccttgagcataatttgtattacattcatgaggttcagcct |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1400899 |
tcatgtgactctccacggaatctaaagggctaagcacagcacttacaccaccttgagcataatttgtattacattcatgaggttcagcct |
1400810 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 42556710 - 42556760
Alignment:
| Q |
36 |
aaaagcagtttgattttattt-atcttttgtcatagtaataacttatacat |
85 |
Q |
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| T |
42556710 |
aaaagtagtttgattttatttcatcttttgtcatagaaataacttatacat |
42556760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 40728497 - 40728566
Alignment:
| Q |
36 |
aaaagcagtttgattttattt-atcttttgtcatagtaataacttatacatgtaaaacttatatgataagc |
105 |
Q |
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| T |
40728497 |
aaaaacagtttgactttattttatcttttgttatagaaataacttatgcatg-aacacttatatgataagc |
40728566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 18704124 - 18704164
Alignment:
| Q |
45 |
ttgattttatttatcttttgtcatagtaataacttatacat |
85 |
Q |
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|||| |||||||||||||||| |||| |||||||||||||| |
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| T |
18704124 |
ttgactttatttatcttttgttatagaaataacttatacat |
18704164 |
T |
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