View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_47 (Length: 334)

Name: NF1166_low_47
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_47
NF1166_low_47
[»] chr1 (2 HSPs)
chr1 (23-124)||(48715012-48715114)
chr1 (71-124)||(27793823-27793876)
[»] chr6 (7 HSPs)
chr6 (44-124)||(12877768-12877848)
chr6 (44-124)||(14579001-14579081)
chr6 (35-124)||(3836092-3836181)
chr6 (44-122)||(21183024-21183102)
chr6 (60-121)||(15951547-15951608)
chr6 (71-124)||(2936635-2936688)
chr6 (91-124)||(20759304-20759337)
[»] chr4 (8 HSPs)
chr4 (44-124)||(580594-580674)
chr4 (35-124)||(31768234-31768322)
chr4 (42-124)||(6685780-6685860)
chr4 (44-124)||(26947469-26947549)
chr4 (39-124)||(6664375-6664461)
chr4 (64-124)||(13250971-13251031)
chr4 (42-121)||(6682328-6682405)
chr4 (94-124)||(572241-572271)
[»] scaffold0321 (1 HSPs)
scaffold0321 (44-124)||(17972-18052)
[»] chr2 (7 HSPs)
chr2 (60-123)||(80466-80529)
chr2 (35-124)||(13438140-13438228)
chr2 (44-124)||(10938458-10938537)
chr2 (44-124)||(10944320-10944399)
chr2 (44-124)||(10947684-10947763)
chr2 (44-124)||(1234328-1234407)
chr2 (44-124)||(10941815-10941894)
[»] chr3 (2 HSPs)
chr3 (50-124)||(6240622-6240696)
chr3 (86-124)||(26361895-26361933)
[»] scaffold0019 (1 HSPs)
scaffold0019 (35-124)||(174073-174161)
[»] scaffold0933 (1 HSPs)
scaffold0933 (44-124)||(1543-1623)
[»] chr7 (2 HSPs)
chr7 (60-124)||(37006263-37006327)
chr7 (95-124)||(38414117-38414146)
[»] chr8 (3 HSPs)
chr8 (86-124)||(29275387-29275425)
chr8 (60-121)||(29260363-29260422)
chr8 (44-120)||(24681387-24681463)
[»] chr5 (1 HSPs)
chr5 (91-124)||(28152145-28152178)


Alignment Details
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 48715012 - 48715114
Alignment:
Q  23 aataatgttaagtttttattaaaaatattttta-tgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaattta 121  Q
    |||||| |||||||||||||||||||||||||  | | ||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||    
T  48715012 aataatattaagtttttattaaaaatattttttctatatttctcaattgaaaatatggaacacaaattatttgaaacttttgaaatatactcaaaattta 48715111  T
Q  122 caa 124  Q
    |||    
T  48715112 caa 48715114  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 27793823 - 27793876
Alignment:
Q  71 aaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  27793823 aaaatatggaacacaaaatatttaaaacttttgaaatatactcaaaatttacaa 27793876  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 12877768 - 12877848
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||| | | |||||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  12877768 aaaatatttttctatatttctcaattaaaaatatgggacacaaaatatttgaaacttttgaaatatactcaaaatttacaa 12877848  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 14579081 - 14579001
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||| | | |||||||||| ||||||| ||| |  |||| |||||||||||||||||||| |||||||||||||    
T  14579081 aaaatatttttctatatttctcaattaaaaatatagaatataaaatatttgaaacttttgaaatataatcaaaatttacaa 14579001  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 3836092 - 3836181
Alignment:
Q  35 tttttattaaaaatatttttatgtgtttctcaattgaaaatatggaacacgaaa-tgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    |||||||||||| || |||| | | |||||||||| |||||||||||||| ||| | |||||||||||||||||||  |||||||||||||    
T  3836092 tttttattaaaa-tacttttctatatttctcaattaaaaatatggaacacaaaaatatttgaaacttttgaaatatgttcaaaatttacaa 3836181  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 21183024 - 21183102
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttac 122  Q
    ||||||||||| | | ||||||||||||||||||||||||| |||| |  |||| |||| ||||||| |||||||||||    
T  21183024 aaaatatttttctatatttctcaattgaaaatatggaacacaaaatataagaaatttttaaaatataatcaaaatttac 21183102  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 15951608 - 15951547
Alignment:
Q  60 tttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaattta 121  Q
    |||||||||| ||||||||| |||| || | ||| |||||||||||||||||||||||||||    
T  15951608 tttctcaattaaaaatatgggacacaaattatttaaaacttttgaaatatactcaaaattta 15951547  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 2936635 - 2936688
Alignment:
Q  71 aaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||| |||| |||| ||||||| |||||||||||| |||||||||||||    
T  2936635 aaaatatgggacacaaaatatttgaaatttttgaaatataatcaaaatttacaa 2936688  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 20759304 - 20759337
Alignment:
Q  91 tttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||||||||||||||||||||||||||    
T  20759304 tttgaaacttttgaaatatactcaaaatttacaa 20759337  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 580594 - 580674
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||| | | |||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||    
T  580594 aaaatatttttctatatttctcaattgaaaatatgggacacaaaatatttaaaacttttgaaatatactcaaaatttacaa 580674  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 31768234 - 31768322
Alignment:
Q  35 tttttattaaaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    |||||||||||| || |||| | | |||||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||    
T  31768234 tttttattaaaa-taattttctatatttctcaattaaaaatatgggacacaaaatatttgaaacttttgaaatatactcaaaatttacaa 31768322  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 6685860 - 6685780
Alignment:
Q  42 taaaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||||| | | |||||||||| ||||||||| |||  |||| ||||||||||||||||||||||||||||||||||    
T  6685860 taaaaatatttttttatatttctcaattaaaaatatgggaca--aaatatttgaaacttttgaaatatactcaaaatttacaa 6685780  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 26947549 - 26947469
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||||  | |||||||||||||||||||| |||| |||| ||| | |||||||||||||| |||||||||||||    
T  26947549 aaaatatttttagatatttctcaattgaaaatatgggacacaaaatattttagacttttgaaatataatcaaaatttacaa 26947469  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 6664375 - 6664461
Alignment:
Q  39 tattaaaaatatttttatgtgtttctcaattgaaaa-tatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    |||| ||||||||||| | | |||||||||| |||| ||||| |||| |||| |||||||||||||||||| |||||||||||||||    
T  6664375 tatttaaaatatttttctatatttctcaattaaaaaatatgggacacaaaatatttgaaacttttgaaatacactcaaaatttacaa 6664461  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 13250971 - 13251031
Alignment:
Q  64 tcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    |||||||||||||||| |||  |||| |||||||||||||||||||| |||||||||||||    
T  13250971 tcaattgaaaatatgggacataaaatatttgaaacttttgaaatataatcaaaatttacaa 13251031  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 6682405 - 6682328
Alignment:
Q  42 taaaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaattta 121  Q
    ||||| ||||||| | | |||||||||| ||||||| | |||  |||| |||||||||||| ||||||||||||||||||    
T  6682405 taaaattatttttctatatttctcaattaaaaatataggaca--aaatatttgaaacttttaaaatatactcaaaattta 6682328  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 124
Target Start/End: Original strand, 572241 - 572271
Alignment:
Q  94 gaaacttttgaaatatactcaaaatttacaa 124  Q
    |||||||||||||||||||||||||||||||    
T  572241 gaaacttttgaaatatactcaaaatttacaa 572271  T

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Target: scaffold0321 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 18052 - 17972
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||| | | |||||||||| ||||||||| |||| |||| |||||||||||||||||||||| |||||||||||    
T  18052 aaaatatttttctatatttctcaattaaaaatatgggacacaaaatatttgaaacttttgaaatatacttaaaatttacaa 17972  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 80529 - 80466
Alignment:
Q  60 tttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttaca 123  Q
    |||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||||    
T  80529 tttctcaattaaaaatatgggacacaaaatatttgaaacttttgaaatatactcaaaatttaca 80466  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 13438140 - 13438228
Alignment:
Q  35 tttttattaaaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    |||||||||||| ||||||| | | |||||||||||||||| ||| |||| |||| ||  |||||||||||||||| |||||||||||||    
T  13438140 tttttattaaaa-tatttttctatatttctcaattgaaaatgtgggacacaaaatattcaaaacttttgaaatatattcaaaatttacaa 13438228  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 10938458 - 10938537
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||| | | ||||||||| |||||||||  |||| ||||  ||||| ||||||||||| |||||||||||||||    
T  10938458 aaaatatttttctatatttctcaatagaaaatatgagacacaaaataattgaa-cttttgaaatacactcaaaatttacaa 10938537  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 10944320 - 10944399
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||| | | ||||||||| |||||||||  |||| ||||  ||||| ||||||||||| |||||||||||||||    
T  10944320 aaaatatttttctatatttctcaatagaaaatatgagacacaaaataattgaa-cttttgaaatacactcaaaatttacaa 10944399  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 10947684 - 10947763
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||| | | ||||||||| |||||||||  |||| ||||  ||||| ||||||||||| |||||||||||||||    
T  10947684 aaaatatttttctatatttctcaatagaaaatatgagacacaaaataattgaa-cttttgaaatacactcaaaatttacaa 10947763  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 1234407 - 1234328
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||| | | ||||||||| |||||||||  |||| ||||  ||||| ||||||||||| |||| ||||||||||    
T  1234407 aaaatatttttctatatttctcaatagaaaatatgagacacaaaataattgaa-cttttgaaatacactccaaatttacaa 1234328  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 10941815 - 10941894
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||| | | ||||||||| |||||||||  |||| ||||  ||||| ||||||||||| | |||||||||||||    
T  10941815 aaaatatttttctatatttctcaatagaaaatatgagacacaaaataattgaa-cttttgaaatacattcaaaatttacaa 10941894  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 6240622 - 6240696
Alignment:
Q  50 tttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||| | |||||||||| ||||||| | |||| |||| ||| ||||||||||||||||||||||||||||||    
T  6240622 tttttatatatttctcaattaaaaatataggacacaaaatatttaaaacttttgaaatatactcaaaatttacaa 6240696  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 26361933 - 26361895
Alignment:
Q  86 aaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  26361933 aaatatttgaaacttttgaaatatactcaaaaattacaa 26361895  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 174161 - 174073
Alignment:
Q  35 tttttattaaaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    |||||||||||| |||||||   | |||||||||||||| ||||  |||| |||| |||||||||||||||||||| |||||||||||||    
T  174161 tttttattaaaa-tatttttcgatatttctcaattgaaagtatgagacacaaaatatttgaaacttttgaaatataatcaaaatttacaa 174073  T

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Target: scaffold0933 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 1543 - 1623
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    |||||||||||   | |||||||||||| ||||||| |||| |||| |||||||||||| ||||||| |||||||||||||    
T  1543 aaaatatttttcgatatttctcaattgataatatgggacacaaaatatttgaaacttttaaaatataatcaaaatttacaa 1623  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 37006327 - 37006263
Alignment:
Q  60 tttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||| |||| ||||||||| |||| |||| |||||||||||| |||||||||||||||||||||    
T  37006327 tttctaaattaaaaatatgggacacaaaatatttgaaacttttaaaatatactcaaaatttacaa 37006263  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 124
Target Start/End: Complemental strand, 38414146 - 38414117
Alignment:
Q  95 aaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||||||||||||||||||||||    
T  38414146 aaacttttgaaatatactcaaaatttacaa 38414117  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 29275425 - 29275387
Alignment:
Q  86 aaatgtttgaaacttttgaaatatactcaaaatttacaa 124  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  29275425 aaatgtttgaaacttttgaaatatacacaaaatttacaa 29275387  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 29260422 - 29260363
Alignment:
Q  60 tttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaattta 121  Q
    |||||||||| ||||||||| | |  |||| ||||||||||||||||||||| |||||||||    
T  29260422 tttctcaattaaaaatatgggaaa--aaatatttgaaacttttgaaatatacacaaaattta 29260363  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 24681387 - 24681463
Alignment:
Q  44 aaaatatttttatgtgtttctcaattgaaaatatggaacacgaaatgtttgaaacttttgaaatatactcaaaattt 120  Q
    ||||||||||| | | |||||||||| ||||| |   |||| |||| |||| ||||||||||||||| |||||||||    
T  24681387 aaaatatttttctatatttctcaattaaaaatctaagacacaaaatatttgtaacttttgaaatatattcaaaattt 24681463  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 28152145 - 28152178
Alignment:
Q  91 tttgaaacttttgaaatatactcaaaatttacaa 124  Q
    ||||||||||||||||||||||||||||||||||    
T  28152145 tttgaaacttttgaaatatactcaaaatttacaa 28152178  T

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