View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_49 (Length: 329)
Name: NF1166_low_49
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 34 - 315
Target Start/End: Complemental strand, 8016751 - 8016470
Alignment:
| Q |
34 |
agatacctcatttgctttgcaatgaaagcttctatcgtacgctgaaactcttcattactcagcttatcctccggatacaaaacttccctcaccttctcct |
133 |
Q |
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| T |
8016751 |
agatacctcatttgctttgcaatgaaagcttctatcgtacgctgaaactcttcattacttagcttatcctccggatacaaaacttccctcaccttctcct |
8016652 |
T |
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| Q |
134 |
tctccggcagagactgacttcgactataaacctttcttcccaagttaccagaacctgttgcatagcatgaatctatatcatccttagaactgtccttaat |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8016651 |
tctccggcagagactgacttcgactataaacctttcttcccaagttaccagaacctgttgcatagcatgaatctatatcatccttagaactgtccttaat |
8016552 |
T |
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| Q |
234 |
ctgttcatccactggagctgcagaattggcggataaagaggaggagaggaggtcagactgaacgaggagggcggcgatgata |
315 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8016551 |
ctgttcatccactggagctgcagaattggcggatgaagaggaggagaggaggtcagactgaacgaggagggcggcgatgata |
8016470 |
T |
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