View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_5 (Length: 691)

Name: NF1166_low_5
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_5
NF1166_low_5
[»] chr7 (25 HSPs)
chr7 (1-680)||(7878214-7878893)
chr7 (39-679)||(8589684-8590324)
chr7 (1-465)||(8608925-8609389)
chr7 (103-366)||(8383674-8383937)
chr7 (39-474)||(8544679-8545114)
chr7 (39-353)||(8580743-8581057)
chr7 (115-344)||(8601093-8601322)
chr7 (55-352)||(8575361-8575658)
chr7 (569-665)||(8643971-8644067)
chr7 (125-364)||(29578472-29578711)
chr7 (195-352)||(8569513-8569670)
chr7 (579-679)||(29578154-29578254)
chr7 (195-467)||(29582538-29582810)
chr7 (579-679)||(8581286-8581386)
chr7 (582-676)||(8646466-8646560)
chr7 (579-679)||(10494856-10494956)
chr7 (528-679)||(13333850-13334001)
chr7 (584-679)||(27831357-27831452)
chr7 (579-679)||(8569897-8569997)
chr7 (647-679)||(8667073-8667105)
chr7 (579-679)||(29582323-29582423)
chr7 (642-679)||(8545282-8545319)
chr7 (579-675)||(8558969-8559065)
chr7 (647-679)||(17259895-17259927)
chr7 (647-679)||(17267593-17267625)
[»] chr8 (2 HSPs)
chr8 (162-353)||(12527673-12527864)
chr8 (647-679)||(12528158-12528190)
[»] chr2 (4 HSPs)
chr2 (579-679)||(11998994-11999094)
chr2 (585-679)||(12245888-12245982)
chr2 (579-679)||(43624998-43625098)
chr2 (579-679)||(16662474-16662574)
[»] chr5 (1 HSPs)
chr5 (579-679)||(28219504-28219604)
[»] chr1 (2 HSPs)
chr1 (579-679)||(15594620-15594720)
chr1 (580-673)||(52549434-52549527)
[»] chr4 (2 HSPs)
chr4 (529-679)||(35131992-35132142)
chr4 (647-679)||(9336373-9336405)


Alignment Details
Target: chr7 (Bit Score: 640; Significance: 0; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 1 - 680
Target Start/End: Complemental strand, 7878893 - 7878214
Alignment:
Q  1 tcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttctcaacagg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7878893 tcagaaagtcgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttccaatttctcaacagg 7878794  T
Q  101 agtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878793 agtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttc 7878694  T
Q  201 atgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878693 atgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgt 7878594  T
Q  301 taccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcgaacttc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  7878593 taccacttgtttcttcctttgcggagacatttaatataccatcagcatctatatcaaaacatacctggattatatgtccacgaggtgcacgacgaacttc 7878494  T
Q  401 gagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaattttgactgtggattggtcatctgcaagtgtgcag 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||| |||||||||||    
T  7878493 gagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcgtaaacatcaattttgacatcggattggtcatcttcaagtgtgcag 7878394  T
Q  501 aatgttcgtttcctctttattggaaaagaagtgttcttaggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatggagtaacat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878393 aatgttcgtttcctctttattggaaaagaagtgttcttaggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatggagtaacat 7878294  T
Q  601 cttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagct 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7878293 cttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagct 7878214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 39 - 679
Target Start/End: Original strand, 8589684 - 8590324
Alignment:
Q  39 ttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactt 138  Q
    ||||| ||||| || ||||  |||||||| |||||||||||||||  |||||| ||||||| ||| ||||| ||||  || || ||||||||||||||||    
T  8589684 ttgtcgtcaattaattttttcccctttatcattgcagaattgattctcactttgtcaacagaagtaagcttggaagctacactgtcatccttcattactt 8589783  T
Q  139 tcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctt 238  Q
    |||||||    ||||  ||||| || |||||||||| ||||||||| |||| || |  |||||||||||||| |||||||| ||||||||| |  ||| |    
T  8589784 tcctcatgtcgtaaagataatcatctaaagcattcattgctctaactttcttcacatgcttcatgtcttcagccttgaagtgctcagcttcctggatcat 8589883  T
Q  239 tctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatata 338  Q
    ||||||||||||||| ||||  ||||||||||||||||| || |||||||| | ||| || ||||||||  |||||||||  || || || |||||||||    
T  8589884 tctctcaatttcttcgcttgtcagtcttccattttcattggttattgtaatattttttttattaccactgctttcttcctcagcagacacgtttaatata 8589983  T
Q  339 ccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaa 438  Q
    |||||||||||||||  ||| |||||||||||   | | |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||    |||    
T  8589984 ccatcagcatctatagaaaagcatacctggataggaagcccacgaggtgcacggcgaactttgagattaaacaaaccaagcaagttgttctcaatcgcaa 8590083  T
Q  439 ccattctctcaccctcataaacatcaattttgactgtggattggtcatctgcaagtgtgcagaatgttcgtttcctctttattggaaaagaagtgttctt 538  Q
    |||||||||||||||||||||||||||| |||||  ||||||| |||||   |  ||||  | ||  | | ||  || |||| |||| ||||||||||||    
T  8590084 ccattctctcaccctcataaacatcaatgttgacactggattgatcatcataacatgtgacgtattcttgctttttccttataggaatagaagtgttctt 8590183  T
Q  539 aggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatca 638  Q
    |||||||||||||||||||||||| |||  || |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  8590184 aggaatcactacatccatgatatcatcatatattgacgtaccaagagacaatggagtaacatcttgtagcaccaaattaggaacattcttaatcccatca 8590283  T
Q  639 caaagcagagcagcctgaacagctgcaccataagcaacagc 679  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  8590284 caaagcaaagcagcttgaacagctgcaccataagcaacagc 8590324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 8608925 - 8609389
Alignment:
Q  1 tcagaaagttgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttctcaacagg 100  Q
    |||||||||  ||||||||||  || |||| || ||  ||||||||||| ||||| | ||| ||||| ||||||| |||||  | || ||| |||  ||     
T  8608925 tcagaaagtccacaaacacaaatgtttcatgttgctctttgtcatcaatcaaattctttccttttatcattgcagcattgagcttcattttgtcagtaga 8609024  T
Q  101 agtgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttc 200  Q
     || ||| | |||||||| ||  |||||||||||||||||| |||  | |||| |||||| |||||| |||||| |||| |||| ||||   ||||||||    
T  8609025 ggtaagcatggaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttc 8609124  T
Q  201 atgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgt 300  Q
    | ||||||    ||||| | ||||||||||| |||| ||||||||||||||||  |||| ||||  |||||||| || || || ||||| |||||||| |    
T  8609125 aagtcttcctctttgaaattctcagcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttat 8609224  T
Q  301 taccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcgaacttc 400  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||  ||| ||||| |||||   | |||||||||| ||| |  | ||||     
T  8609225 taccactggtttcttcctctgcagagacatttaatataccatcagcatctatagcaaagcatacttggataggaagtccacgaggcgcaagaggtacttt 8609324  T
Q  401 gagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaa 465  Q
    ||| ||||| ||||||||||||||||||||||   ||||   |||||||||||| ||||||||||    
T  8609325 gagttcaaataaaccaagcaaattgttctcactagcaacagatctctcaccctcgtaaacatcaa 8609389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 103 - 366
Target Start/End: Complemental strand, 8383937 - 8383674
Alignment:
Q  103 tgagctttgaagtaacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcat 202  Q
    ||||| |||||||||| |||||||| |||||||||||||||||  | ||||  ||||| ||||||||||||| |||| |||| |||| ||||||||||||    
T  8383937 tgagcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcat 8383838  T
Q  203 gtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgtta 302  Q
    |||||||| |||||| | ||| || ||||  ||| ||||||||||||| ||  ||||||  ||||||||||||||| | |||||||| |||| ||| ||     
T  8383837 gtcttcagccttgaaattctctgcctcttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatcttgcttattc 8383738  T
Q  303 ccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacct 366  Q
    ||||  || ||||| || || ||||||||||||||||||||| |||||| |  |||||||||||    
T  8383737 ccacaggtatcttctttagcagagacatttaatataccatcaacatctacagaaaaacatacct 8383674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 39 - 474
Target Start/End: Original strand, 8544679 - 8545114
Alignment:
Q  39 ttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactt 138  Q
    |||| |||||| ||| ||| ||||||||| |||||||||||||| | || ||| || ||||| | |||||| ||| |||| | |||||||||||||||||    
T  8544679 ttgttatcaatcaaactttttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactt 8544778  T
Q  139 tcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctt 238  Q
    ||||||   | ||||  |||| ||||||||||||   ||||  ||| || |   | ||||||||||||| || |||||| |  |||||||| |  ||| |    
T  8544779 tcctcacattgtaaagataatactccaaagcatttcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtcagcttcctggatcat 8544878  T
Q  239 tctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatata 338  Q
    ||||||||||||||||||||||| ||||||||||||| | || ||||||||||| |||||  ||||||| ||||||||  |||| ||||| ||||||| |    
T  8544879 tctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcattcttactaccactggtttcttctgttgcagagacgtttaataaa 8544978  T
Q  339 ccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcgaacttcgagatcaaacaaaccaagcaaattgttctcacctacaa 438  Q
    |||| ||||||||||  ||| |||||    |    | | | ||| || ||| |  |||||| ||||| ||| ||||||||||| ||||||||||   |||    
T  8544979 ccattagcatctatagcaaagcatactgtaaaaggaaggcgacggggagcaagaggaactttgagataaaataaaccaagcaagttgttctcactcgcaa 8545078  T
Q  439 ccattctctcaccctcataaacatcaattttgactg 474  Q
      |||||||||||||||||||||| ||||| |||||    
T  8545079 taattctctcaccctcataaacattaatttggactg 8545114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 39 - 353
Target Start/End: Original strand, 8580743 - 8581057
Alignment:
Q  39 ttgtcatcaatgaaattttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactt 138  Q
    |||| |||||| ||| ||| ||||||||| ||||||||||| || |   |||| || ||||  |||||||||||| |||| | || ||||| ||||||||    
T  8580743 ttgttatcaatcaaactttttccctttatcattgcagaattaatcttttctttgtctacagtggtgagctttgaactaacacaattatcctccattactt 8580842  T
Q  139 tcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctt 238  Q
    |||||| | | ||||  ||||| ||||||||||| | |||| |||| |||| | | |||| |||||||| || ||| ||    ||||||| |  |||| |    
T  8580843 tcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttgaactccatgtcttgagccttaaaaatttcagcttgtaaaatcat 8580942  T
Q  239 tctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatata 338  Q
    | |||||||||| || ||||| |||||||||||||||||||| ||||||||  | |||||  || || |||||||||||| ||| |||||||||||||||    
T  8580943 tttctcaatttcctctcttgaaagtcttccattttcattcgttattgtaatagccttcttactagcatttgtttcttcctctgcagagacatttaatata 8581042  T
Q  339 ccatcagcatctata 353  Q
    ||||||| |||||||    
T  8581043 ccatcagaatctata 8581057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 115 - 344
Target Start/End: Original strand, 8601093 - 8601322
Alignment:
Q  115 taacgctatcatccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagactt 214  Q
    |||| |||||||||||||||||||| |||||  | ||||  ||||| |||| | |||||| |||| |||| |||| | | |||||||||||||||   ||    
T  8601093 taacactatcatccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatcttt 8601192  T
Q  215 gaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttct 314  Q
    ||| | |||||||||||  ||| ||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||| | | || ||||  || |||    
T  8601193 gaaattctcagcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttcttgcctattcccacaggtatct 8601292  T
Q  315 tcctttgcggagacatttaatataccatca 344  Q
    ||| | ||||| || ||||| |||||||||    
T  8601293 tccgtcgcggatacgtttaaaataccatca 8601322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 55 - 352
Target Start/End: Original strand, 8575361 - 8575658
Alignment:
Q  55 tttctccctttataattgcagaattgatttccactttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctcattctataaat 154  Q
    ||||||||||||| ||||| ||||| || | | |||| || ||||| ||||||||||||  ||| | |||||||||||||| |||||||    | | ||     
T  8575361 tttctccctttatcattgctgaattaatcttctctttgtcgacaggggtgagctttgaaccaacaccatcatccttcattaatttcctcgcattgtgaag 8575460  T
Q  155 gtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcc 254  Q
     ||||| ||||| ||||| | |||| |||| |||| | | |||| |||||||| || ||||||    |||||||||| |||| ||||| |||||||||      
T  8575461 ataatcgtccaatgcatttattgctgtaactttcttcttgaactccatgtcttgagccttgaaaatttcagcttcttgaatcattctcgcaatttcttga 8575560  T
Q  255 cttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctat 352  Q
     | |||||||| |  | || |||||| |||| |||  ||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  8575561 gtcgatagtctacagtattgattcgtcattgcaatacctttcttataaccacttgtttcttcctttgccgagacatttaatataccatcaacatctat 8575658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 569 - 665
Target Start/End: Original strand, 8643971 - 8644067
Alignment:
Q  569 tactgacgtgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgca 665  Q
    ||||| ||| ||||||||||||| ||||||||||| || |||||||||||| |||||||||||||| || ||||||| || ||||||||||||||||    
T  8643971 tactgtcgtaccaagagacaatgaagtaacatcttccagcaccaaattaggtacattcttaataccttcgcaaagcaaagaagcctgaacagctgca 8644067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 125 - 364
Target Start/End: Complemental strand, 29578711 - 29578472
Alignment:
Q  125 atccttcattactttcctcattctataaatgtaatcctccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactca 224  Q
    ||||| ||||||||| ||| || | ||||  ||||| ||||||||||| || |||||| | |||||   ||||||||| ||||||  |||||| | ||||    
T  29578711 atcctccattactttactcgttttgtaaagataatcttccaaagcatttaccgctctagctttctcttgaaacttcatatcttcaaccttgaatttctca 29578612  T
Q  225 gcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcgg 324  Q
    |||||||  ||| ||| |||||||||||   |||| ||||||| ||| ||||| || ||||| || ||  |||| || ||| ||||||||||||  || |    
T  29578611 gcttcttggatcattcgctcaatttcttgagttgaaagtcttctattatcatttgttattgtgatctcactcttatttccagttgtttcttcctcagcag 29578512  T
Q  325 agacatttaatataccatcagcatctatattaaaacatac 364  Q
     |||||||||||||||||| ||||| |||  |||||||||    
T  29578511 tgacatttaatataccatctgcatcgatagcaaaacatac 29578472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 195 - 352
Target Start/End: Original strand, 8569513 - 8569670
Alignment:
Q  195 aacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 294  Q
    ||||||||||||| || |||||| | ||||||||| |  ||| |||||||||||| | ||||||||| |||||| || ||||| || ||||||||||| |    
T  8569513 aacttcatgtcttgagccttgaaattctcagcttcctggatcattctctcaatttgtccccttgataatcttcccttctcattagttattgtaatttcat 8569612  T
Q  295 tcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctat 352  Q
    | || || ||||| |||||||||  ||| ||||| || || || ||||||||||||||    
T  8569613 ttttattgccactggtttcttccactgcagagacgttcaaaattccatcagcatctat 8569670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 579 - 679
Target Start/End: Complemental strand, 29578254 - 29578154
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 678  Q
    ||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| ||||||   | || ||||||||| ||||||||||||||||||||||    
T  29578254 ccaagcgacaagggtgtaatatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacag 29578155  T
Q  679 c 679  Q
    |    
T  29578154 c 29578154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 195 - 467
Target Start/End: Complemental strand, 29582810 - 29582538
Alignment:
Q  195 aacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgatagtcttccattttcattcgtaattgtaatttctt 294  Q
    |||||||  ||||||  |||||| | ||| |||||||  ||| ||||||||||||||||  |||| | |||||||||| |||| || |||||||| ||||    
T  29582810 aacttcagatcttcaaccttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctctt 29582711  T
Q  295 tcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctatattaaaacatacctggattctatgtccacgaggtgcacggcg 394  Q
    | || || ||| | ||||||||||  || | |||||||| ||||||||| |||||||||  ||| ||||| | ||| | | | || ||||| |||||  |    
T  29582710 ttttatttccagtggtttcttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttgatacgaaggccgcgaggagcacgagg 29582611  T
Q  395 aacttcgagatcaaacaaaccaagcaaattgttctcacctacaaccattctctcaccctcataaacatcaatt 467  Q
    || |  ||||  ||||||||| ||||| ||||||||||   |    |||||||||||||||||||||| ||||    
T  29582610 aattaagagactaaacaaacccagcaagttgttctcactggcttttattctctcaccctcataaacattaatt 29582538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 579 - 679
Target Start/End: Original strand, 8581286 - 8581386
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 678  Q
    ||||| |||||||| ||||||||| |||| | ||| || |||||| ||||||| || |||| || || ||||||||||| ||| ||||||||||||||||    
T  8581286 ccaagtgacaatggtgtaacatctcgcaaaatcaagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaacag 8581385  T
Q  679 c 679  Q
    |    
T  8581386 c 8581386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 582 - 676
Target Start/End: Original strand, 8646466 - 8646560
Alignment:
Q  582 agagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaac 676  Q
    ||||||||||| || |||||||| |||||||| || ||| |||||||||  |||||||| |  | |||||||||||| ||||| |||||||||||    
T  8646466 agagacaatggggtgacatcttgaaacaccaagtttggagcattcttaaagccatcacataataaagcagcctgaacggctgcgccataagcaac 8646560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 679
Target Start/End: Complemental strand, 10494956 - 10494856
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 678  Q
    ||||| |||||||| ||||||||| | | |||||| || || ||||||||||  || ||||  |  | ||||||||||||||||||||||||||||||||    
T  10494956 ccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacag 10494857  T
Q  679 c 679  Q
    |    
T  10494856 c 10494856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 528 - 679
Target Start/End: Complemental strand, 13334001 - 13333850
Alignment:
Q  528 gaagtgttcttaggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattct 627  Q
    ||||||||| |||||||||| |||| ||||||||  |||  ||||||  | ||||| || |||||  |||||||| | | |||||| || || ||| |||    
T  13334001 gaagtgttcctaggaatcacaacattcatgatatgttcatatactgaaataccaagtgataatgggataacatctcgtagcaccaagttcgggacagtct 13333902  T
Q  628 taataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagc 679  Q
    |||  || ||||  |  | |||||||||||||||||||||||||||||||||    
T  13333901 taaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagc 13333850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 679
Target Start/End: Complemental strand, 27831452 - 27831357
Alignment:
Q  584 agacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagc 679  Q
    ||||| ||||||||||||   ||||||||| || ||||||||| ||||  ||||||  | || ||||||||| |||||||||||| ||||||||||    
T  27831452 agacagtggagtaacatcgatcaacaccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagc 27831357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 679
Target Start/End: Original strand, 8569897 - 8569997
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 678  Q
    ||||| |||||||| ||||||||| |||| ||||| || |||||| ||||||  |  |||| | ||| | ||||||||| ||||||||| ||||||||||    
T  8569897 ccaagtgacaatggtgtaacatctcgcaaaaccaagtttggaacactcttaacgctttcactatgcaaaacagcctgaatagctgcaccgtaagcaacag 8569996  T
Q  679 c 679  Q
    |    
T  8569997 c 8569997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 647 - 679
Target Start/End: Original strand, 8667073 - 8667105
Alignment:
Q  647 agcagcctgaacagctgcaccataagcaacagc 679  Q
    |||||||||||||||||||||||||||||||||    
T  8667073 agcagcctgaacagctgcaccataagcaacagc 8667105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 679
Target Start/End: Complemental strand, 29582423 - 29582323
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 678  Q
    ||||| ||||| || |||| ||||||||| |  ||||  |||||||||| ||| || |||   |||| ||||||||| ||||||||||||||||||||||    
T  29582423 ccaagtgacaagggtgtaatatcttgcaagataaaatctggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacag 29582324  T
Q  679 c 679  Q
    |    
T  29582323 c 29582323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 642 - 679
Target Start/End: Original strand, 8545282 - 8545319
Alignment:
Q  642 agcagagcagcctgaacagctgcaccataagcaacagc 679  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  8545282 agcaaagcagcctggacagctgcaccataagcaacagc 8545319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 579 - 675
Target Start/End: Original strand, 8558969 - 8559065
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaa 675  Q
    ||||| ||||| || |||||||||  || |||||  || |||||||||||| |  | |||| ||||| | ||||||| |||||||||||||||||||    
T  8558969 ccaagggacaaaggggtaacatctctcagcaccatgtttggaacattcttagtgtcttcactaagcaaaacagcctggacagctgcaccataagcaa 8559065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 647 - 679
Target Start/End: Original strand, 17259895 - 17259927
Alignment:
Q  647 agcagcctgaacagctgcaccataagcaacagc 679  Q
    ||||||||||||||| |||||||||||||||||    
T  17259895 agcagcctgaacagcagcaccataagcaacagc 17259927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 647 - 679
Target Start/End: Original strand, 17267593 - 17267625
Alignment:
Q  647 agcagcctgaacagctgcaccataagcaacagc 679  Q
    ||||||||||||||| |||||||||||||||||    
T  17267593 agcagcctgaacagcagcaccataagcaacagc 17267625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 162 - 353
Target Start/End: Original strand, 12527673 - 12527864
Alignment:
Q  162 tccaaagcattcactgctctaaccttctccataaacttcatgtcttcagacttgaagtactcagcttctttaatctttctctcaatttcttcccttgata 261  Q
    ||||||||||| | |||| |||| ||||   | |||||||| ||||||| |||||| | ||||||||| |  ||| ||||| |||||||||| |||||||    
T  12527673 tccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctcagcttcctggatcattctcccaatttcttcacttgata 12527772  T
Q  262 gtcttccattttcattcgtaattgtaatttctttcttgttaccacttgtttcttcctttgcggagacatttaatataccatcagcatctata 353  Q
     ||||||||||||||| || |||||||| |||||||| |||||||| |||| |||||| || ||||| ||||||||||| ||||||||||||    
T  12527773 atcttccattttcatttgttattgtaatatctttcttattaccactggttttttccttcgcagagacttttaatataccgtcagcatctata 12527864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 647 - 679
Target Start/End: Original strand, 12528158 - 12528190
Alignment:
Q  647 agcagcctgaacagctgcaccataagcaacagc 679  Q
    ||||||||||||||| |||||||||||||||||    
T  12528158 agcagcctgaacagcggcaccataagcaacagc 12528190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 579 - 679
Target Start/End: Original strand, 11998994 - 11999094
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 678  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||||||||| | | ||||  | || |||||| ||||||||||| |||||||| ||||    
T  11998994 ccaagagacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctacag 11999093  T
Q  679 c 679  Q
    |    
T  11999094 c 11999094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 585 - 679
Target Start/End: Complemental strand, 12245982 - 12245888
Alignment:
Q  585 gacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagc 679  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||| | | | ||  | || |||||| ||||||||||| ||||||||||||||    
T  12245982 gacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatctttactcaacaaagcagcttgaacagctgccccataagcaacagc 12245888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 679
Target Start/End: Original strand, 43624998 - 43625098
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 678  Q
    ||||| ||||| || ||||||||| ||| |||||| || |||||||||||||| || | ||  |  | ||||||||| ||||||||||||||||||||||    
T  43624998 ccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgcctttactcaaaatagcagcctggacagctgcaccataagcaacag 43625097  T
Q  679 c 679  Q
    |    
T  43625098 c 43625098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 679
Target Start/End: Complemental strand, 16662574 - 16662474
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 678  Q
    ||||| |||||||| ||||| ||| ||| |||||| || ||||||| |||||| || ||||  | || |||||| || |||||||| |||||||||||||    
T  16662574 ccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacag 16662475  T
Q  679 c 679  Q
    |    
T  16662474 c 16662474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 579 - 679
Target Start/End: Original strand, 28219504 - 28219604
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 678  Q
    ||||||||||| || ||||||||||||| |||||| || ||||| || ||||  || ||||  | || ||||||||| ||||||||||||||||||||||    
T  28219504 ccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagcaacag 28219603  T
Q  679 c 679  Q
    |    
T  28219604 c 28219604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 579 - 679
Target Start/End: Original strand, 15594620 - 15594720
Alignment:
Q  579 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 678  Q
    ||||||||||| || | ||||||||| | |||||| || |||||||| |||| ||| ||||  | || ||||||||| ||||||||||||||||||||||    
T  15594620 ccaagagacaaaggtgcaacatcttgtatcaccaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacag 15594719  T
Q  679 c 679  Q
    |    
T  15594720 c 15594720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 673
Target Start/End: Complemental strand, 52549527 - 52549434
Alignment:
Q  580 caagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagc 673  Q
    |||||||||| || |||||||| |||| |||||| || |||||||||| ||| || ||||  | ||  ||||||||||||||||| ||||||||    
T  52549527 caagagacaaaggtgtaacatcctgcagcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagc 52549434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 679
Target Start/End: Original strand, 35131992 - 35132142
Alignment:
Q  529 aagtgttcttaggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattctt 628  Q
    |||||||| |||||||||| |||| |||||||||  | | || |||| | ||||||||||| || |||||||| || |||||||| || |||||||| ||    
T  35131992 aagtgttcctaggaatcaccacattcatgatatctcctactattgacctaccaagagacaaaggtgtaacatcctgtaacaccaactttggaacattttt 35132091  T
Q  629 aataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagc 679  Q
     || || | ||  | || |||||||||||| ||||| |||||||| |||||    
T  35132092 tatgcctttactcaacaaagcagcctgaactgctgccccataagctacagc 35132142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 647 - 679
Target Start/End: Complemental strand, 9336405 - 9336373
Alignment:
Q  647 agcagcctgaacagctgcaccataagcaacagc 679  Q
    |||||| ||||||||||||||||||||||||||    
T  9336405 agcagcttgaacagctgcaccataagcaacagc 9336373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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