View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_50 (Length: 323)
Name: NF1166_low_50
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_50 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 323
Target Start/End: Original strand, 4556997 - 4557308
Alignment:
| Q |
9 |
actagttcatcactcacaacttcagttatcaaatctttaaagatcagccgctcgatatccaacaccatatttggtatctcgctgaaacaattagtccaca |
108 |
Q |
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| T |
4556997 |
actagttcatcactcacaacttcagttatcaaatctttaaagatcaaccgctcaatatccaacaccatattcggtatctcgctgcaacagttagtccaaa |
4557096 |
T |
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| Q |
109 |
tggtgttgtgatcgttcaaatctctccacaaaagacttgtcaatttctcatcctcatgatgaacaaagcttacattcctattttgaggttgtaaatcatc |
208 |
Q |
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| T |
4557097 |
ttgtgttgtgatccttcaaatctctccacaaaagacttaacaaattgtcatcctcatga---acaaagtttagattcctattttgaggttgtaaatcatc |
4557193 |
T |
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| Q |
209 |
tatctctgtacatagctcttcgaaaagcttcttcccttttagcctttgacccactaactcttccaatatcagttttttaactagaatgtcattaacaaca |
308 |
Q |
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| T |
4557194 |
tatcgctgtacataactcttcaaaaagctttttcccttttagcttttgaccctctaactcttccaatatcagttttttaactagaatgtcattaacaaca |
4557293 |
T |
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| Q |
309 |
tcgaatatgagcttt |
323 |
Q |
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| T |
4557294 |
tcgaatatgagcttt |
4557308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 5023215 - 5023282
Alignment:
| Q |
21 |
ctcacaacttcagttatcaaatctttaaagatcagccgctcgatatccaacaccatatttggtatctc |
88 |
Q |
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| T |
5023215 |
ctcacaacttcagttatcaaatctttgaagatcaatctttcaatatccaacacaacatttggtatctc |
5023282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 5023476 - 5023529
Alignment:
| Q |
270 |
tccaatatcagttttttaactagaatgtcattaacaacatcgaatatgagcttt |
323 |
Q |
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| T |
5023476 |
tccaatattagcttttgaaatagaatttcattaacaacatcaaatatgagcttt |
5023529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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