View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_54 (Length: 314)
Name: NF1166_low_54
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 52 - 301
Target Start/End: Original strand, 54198614 - 54198863
Alignment:
| Q |
52 |
tgttgtttgaaagaagaaagcaaattaagatggccggaggagctcctggggaaagaacattgaaggaaacaccaacttgggctgttgctgctgtctgcgc |
151 |
Q |
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| T |
54198614 |
tgttgtttgaaagaagaaagcaaattaagatggccggaggagctcctggggaaagaacattgaaggaaacaccaacttgggctgttgctgctgtctgcgc |
54198713 |
T |
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| Q |
152 |
agtgttcgtcatcatctcagtattaattgaacatggaatccataaacttgaaaaggtatacctgtataatataaagttcaataatattgatccattcatc |
251 |
Q |
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| T |
54198714 |
agtgttcgtcatcatctcagtattaattgaacatggaatccataaacttgaaaaggtatacctgtataatataaagttcaataatattgatccattcatc |
54198813 |
T |
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| Q |
252 |
ttttggtcttaattaagtttcaagtaaactgagaataagtatctgcagta |
301 |
Q |
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| T |
54198814 |
ttttggtcttaattaagtttcaagtaaactgagaataagtatctgcagta |
54198863 |
T |
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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 36333285 - 36333229
Alignment:
| Q |
3 |
ctatcatgttttcatgtcagaaaatcgttcaggaatcaggaaaactctctgttgttt |
59 |
Q |
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| T |
36333285 |
ctatcatgttttcatgtcagaaaatcgttcaggaatcaggaaaactctctgttgttt |
36333229 |
T |
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