View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_55 (Length: 313)
Name: NF1166_low_55
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_55 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 71 - 313
Target Start/End: Original strand, 25869933 - 25870166
Alignment:
| Q |
71 |
gagatgaaaggtggagataaaaattggtccgatgatcaatacaggatgaagaagaagcgtaaggaattgggtggggaatcatcatcatcnnnnnnnnnnn |
170 |
Q |
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| T |
25869933 |
gagatgaaaggtggagataaaaattggtccgatgatcaatacaggatgaagaagaagcgtaaggaattgggtggggaatcatcatcatccaacaaca--- |
25870029 |
T |
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| Q |
171 |
nnnnnnttgcgcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagagg |
270 |
Q |
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| T |
25870030 |
------ttgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagagg |
25870123 |
T |
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| Q |
271 |
cattaaccctcctcctaatttcagaagacaacaacaactactt |
313 |
Q |
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| T |
25870124 |
cattaaccctcctcctaatttcagaagacaacaacaacaactt |
25870166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 177 - 305
Target Start/End: Original strand, 43383309 - 43383437
Alignment:
| Q |
177 |
ttgcgcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagaggcattaa |
276 |
Q |
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| T |
43383309 |
ttgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagaggcattaa |
43383408 |
T |
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| Q |
277 |
ccctcctcctaatttcagaagacaacaac |
305 |
Q |
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| T |
43383409 |
ccctccacctaatttcagaagacaacaac |
43383437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 43383170 - 43383207
Alignment:
| Q |
71 |
gagatgaaaggtggagataaaaattggtccgatgatca |
108 |
Q |
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| T |
43383170 |
gagatgaaaggtggagataaaaattggtccgatgatca |
43383207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 43383254 - 43383294
Alignment:
| Q |
119 |
aagaagaagcgtaaggaattgggtggggaatcatcatcatc |
159 |
Q |
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| T |
43383254 |
aagaagaagagtaaggaattgggtggggaatcatcatcatc |
43383294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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