View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_58 (Length: 293)
Name: NF1166_low_58
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 283
Target Start/End: Original strand, 44608150 - 44608403
Alignment:
| Q |
30 |
cagtagacttgttagagctgcacactgtagaagtaaacattgtttcaaatctatctgttagaacaacagccctggttcaaaagtaaaaagatacaaaaga |
129 |
Q |
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| T |
44608150 |
cagtagacttgttagagctgcacactgtagaagtaaacattgtttcaaatctatctgttagaacaacagccctggttcaaaagtaaaaagatacaaaaga |
44608249 |
T |
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| Q |
130 |
tgcaagtagagaaaacacatatttgatcacttggtttgaccatctctgtgttttcgaccgtagaggctacaatgcctctttataatcaagcttatgattt |
229 |
Q |
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| T |
44608250 |
tgcaagtagagaaaacacatatttgatcacttggtttgaccatctctgtgttttcgaccgtagaggctacaatgcctctttataatcaagcttatgattt |
44608349 |
T |
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| Q |
230 |
acaaagtacaacctgtacttaaatgctacagtccaatttacaagattacctttg |
283 |
Q |
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| T |
44608350 |
acaaagtacaacctgtacttaaatgctacagtccaatttacaagattacctttg |
44608403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 5055929 - 5055891
Alignment:
| Q |
85 |
tgttagaacaacagccctggttcaaaagtaaaaagatac |
123 |
Q |
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| T |
5055929 |
tgttagaacaacaaccctggttcaaaagtaaaaagatac |
5055891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 34372473 - 34372535
Alignment:
| Q |
215 |
tcaagcttatgatttacaaagtacaacctgtacttaaatgctacagtccaatttacaagatta |
277 |
Q |
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| T |
34372473 |
tcaagcttagggtttacaaagtacaacttgtatttaaatactacgatccagtttacaagatta |
34372535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 33717198 - 33717259
Alignment:
| Q |
87 |
ttagaacaacagccctggttcaaaagtaaaaagatacaaaagatgcaagtagagaaaacaca |
148 |
Q |
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| T |
33717198 |
ttagaacaacaaccctagttcaaaagtaaacagatacgaaaaatgcaaacagagaacacaca |
33717259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 29820447 - 29820511
Alignment:
| Q |
84 |
ctgttagaacaacagccctggttcaaaagtaaaaagatacaaaagatgcaagtagagaaaacaca |
148 |
Q |
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| T |
29820447 |
ctgttagaacaacaaccctggtttaaaagaaaacagatacaaaaaagggaaatagagaatacaca |
29820511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 38779504 - 38779440
Alignment:
| Q |
215 |
tcaagcttatgatttacaaagtacaacctgtacttaaatgctacagtccaatttacaagattacc |
279 |
Q |
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||||||||| | ||| || |||||||| ||| |||||| |||||||||| |||||||||||||| |
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| T |
38779504 |
tcaagcttagggtttgcatagtacaacttgtgtttaaatactacagtccagtttacaagattacc |
38779440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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