View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_60 (Length: 287)

Name: NF1166_low_60
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_60
NF1166_low_60
[»] chr7 (4 HSPs)
chr7 (202-267)||(7745410-7745475)
chr7 (202-262)||(12542610-12542674)
chr7 (44-78)||(7745252-7745286)
chr7 (44-78)||(12542797-12542831)
[»] scaffold0716 (1 HSPs)
scaffold0716 (202-258)||(2642-2698)
[»] chr3 (1 HSPs)
chr3 (202-246)||(45632477-45632521)


Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 7745410 - 7745475
Alignment:
Q  202 aattgacaagtaagggtggtacaagagtggtacctccacatggggttgtctacgtataactgctct 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7745410 aattgacaagtaagggtggtacaagagtggtacctccacatggggttgtctacgtataactgctct 7745475  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 12542674 - 12542610
Alignment:
Q  202 aattgacaagtaagggtggtacaagagtggta----cctccacatggggttgtctacgtataact 262  Q
    ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  12542674 aattgacaagtaagggtggtacaagagtggtaggtacctccacatggggttgtctacgtataact 12542610  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 7745252 - 7745286
Alignment:
Q  44 tgttctagatcttctaaatcgcaacatggatgggg 78  Q
    |||||||||||||||||| ||||||||||||||||    
T  7745252 tgttctagatcttctaaaacgcaacatggatgggg 7745286  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 12542831 - 12542797
Alignment:
Q  44 tgttctagatcttctaaatcgcaacatggatgggg 78  Q
    |||||||||||||||||| ||||||||||||||||    
T  12542831 tgttctagatcttctaaaacgcaacatggatgggg 12542797  T

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Target: scaffold0716 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 2698 - 2642
Alignment:
Q  202 aattgacaagtaagggtggtacaagagtggtacctccacatggggttgtctacgtat 258  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||||||    
T  2698 aattgacaagtaagggtggtagaagagtggtacctccacataggggtgtttacgtat 2642  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 45632521 - 45632477
Alignment:
Q  202 aattgacaagtaagggtggtacaagagtggtacctccacatgggg 246  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||    
T  45632521 aattgacaagtaagggtggtagaagagtgttacctccacatgggg 45632477  T

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