View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_61 (Length: 286)
Name: NF1166_low_61
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_61 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 4664764 - 4665041
Alignment:
| Q |
17 |
catcgtagatatgcagattataagagagattctggaaaaagagaaattggataatatatcttcaataaaaccatacaagttttgtcaagaaaaaggaaaa |
116 |
Q |
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| T |
4664764 |
catcgtagatatgcagattataagagagattctggaaaaagagaaattggataatatatcttcaataaaaccatacaagttatgtcaagaaaaaggaaaa |
4664863 |
T |
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| Q |
117 |
tcat--------gtatctaacgatatgtaacctatacacaagttacttcacaccaaaaagaagaaacactacgtgcatattaattataatgaatcatatt |
208 |
Q |
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| T |
4664864 |
tcataccagtatgtatctaacgatatgtaacctatacacaagttacttcacaccaaaaagaagaaacactacgtgcatattaattataatgaatcatatt |
4664963 |
T |
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| Q |
209 |
ttacataacacatttacaaatttatataggtatctccacaacacaaacacccgagtgtgacaagttacttgcttcttc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
4664964 |
ttacataacacatttacaaatttatataggtatctccacaacacaaacaccctagtgtgacaatttacttgcttcttc |
4665041 |
T |
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