View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_65 (Length: 272)
Name: NF1166_low_65
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 53620628 - 53620826
Alignment:
| Q |
31 |
attattctaagattttttaaatattgagattgagatcaccagtgtactcccttaccaagtgaggtttctttttatcttccattttaataataggccggaa |
130 |
Q |
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| T |
53620628 |
attattctaagattttttaaatattgagattgagatcaccagtgtactctcttaccaagtgaggtttctttttatcttccattttaataataggcaggaa |
53620727 |
T |
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| Q |
131 |
ccaagggtccaaggcaaccatggcatgatctacattgcaaaatcgaagggcctgctgcatatgatatactaactaattttgagcagcgctggaagaaag |
229 |
Q |
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| T |
53620728 |
ccaagggtccaaggcaaccatggcatgatctacattgcaaaatcgaagggcctgctgcatatgatatactaactaattttgagcagcgctggaagaaag |
53620826 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 36841127 - 36841068
Alignment:
| Q |
139 |
ccaaggcaaccatggcatgatctacattgcaaaatcgaagggcctgctgcatatgatata |
198 |
Q |
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| T |
36841127 |
ccaaggcaaccatggcatgacttacattgcaaaattgaaggtccggctgcatatgatata |
36841068 |
T |
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