View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_66 (Length: 270)
Name: NF1166_low_66
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 41063032 - 41063274
Alignment:
| Q |
1 |
ggtgatggattcacacagagaagagctacacctagcacttgaagcatctctggtgtttttgttccacactgtaataataattgctgatcaataatagatg |
100 |
Q |
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| T |
41063032 |
ggtgatggattcacacagagaagagctacacctagcacttgaagcatctctggtgtttttgttccacactgtaataataattgctgatcaataatagatg |
41063131 |
T |
|
| Q |
101 |
tgaattcttttttcttctctctgatttcgctgataacccatgttacaatgtgagcaccctctggaatcctgttatcagttggttccattccagttaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41063132 |
tgaattcttttttcttctctctgatttcgctgataacccatgttacaatgtgagcaccctctggaatcctgttatcagttggttccattccagttaacat |
41063231 |
T |
|
| Q |
201 |
ctcaaggagcacaacaccatagctgtacacatcactcttctct |
243 |
Q |
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| T |
41063232 |
ctcaaggagcacaacaccatagctgtacacatcactcttctct |
41063274 |
T |
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