View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_69 (Length: 262)
Name: NF1166_low_69
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_69 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 8881592 - 8881339
Alignment:
| Q |
9 |
gaagaatatcacattccattttaatatttagataaaataactttttaacttaaaaaccaacccaaaccaacaacactccctaattaataacctatagtac |
108 |
Q |
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| T |
8881592 |
gaagaaaatcacattccatttaaatatttagataaaataactttttaacttaaaaaccaacccaaaccaacaacactccctaattaataacctatagtac |
8881493 |
T |
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| Q |
109 |
atacatctacttactataataagagtatcattagactttatgaaaaaatgaagtgtcataatcaagtaacatcaatcaaccggggtccgagaaaacattt |
208 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8881492 |
atacatctacttactataataagtgtatcattagcctttatgaaaaaatgaagtgtcataatcaagttacatcaatcaaccggggtccgagaaaacattt |
8881393 |
T |
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| Q |
209 |
tcttacaacataactaattctataaatattgatgtgattgtttatttctaacaa |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8881392 |
tcttacaacataactaattctataaatattgatgtgattgtttatttctaacaa |
8881339 |
T |
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