View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_73 (Length: 252)

Name: NF1166_low_73
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_73
NF1166_low_73
[»] chr6 (7 HSPs)
chr6 (4-61)||(19748161-19748218)
chr6 (1-60)||(6228236-6228296)
chr6 (1-60)||(18903343-18903403)
chr6 (3-61)||(17217019-17217078)
chr6 (4-49)||(15716995-15717040)
chr6 (1-49)||(20415549-20415598)
chr6 (9-60)||(9763502-9763553)
[»] chr1 (17 HSPs)
chr1 (2-60)||(2017661-2017719)
chr1 (1-60)||(49239823-49239883)
chr1 (4-57)||(50065072-50065126)
chr1 (1-61)||(14262696-14262757)
chr1 (1-49)||(24134611-24134660)
chr1 (1-60)||(49620031-49620091)
chr1 (7-61)||(10123028-10123083)
chr1 (3-49)||(25031484-25031531)
chr1 (3-61)||(40061504-40061563)
chr1 (6-61)||(47651936-47651991)
chr1 (1-49)||(12148560-12148609)
chr1 (1-60)||(16985911-16985971)
chr1 (1-60)||(19424105-19424165)
chr1 (1-60)||(29332343-29332403)
chr1 (1-37)||(29491529-29491565)
chr1 (1-60)||(43109214-43109274)
chr1 (13-49)||(50593500-50593536)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-61)||(419771-419832)
[»] chr7 (11 HSPs)
chr7 (1-61)||(38378278-38378339)
chr7 (1-60)||(48433686-48433746)
chr7 (5-60)||(4956068-4956124)
chr7 (1-60)||(28914853-28914913)
chr7 (1-60)||(31793527-31793587)
chr7 (2-59)||(23824569-23824627)
chr7 (1-37)||(40273880-40273917)
chr7 (6-58)||(48619860-48619913)
chr7 (1-60)||(3961384-3961444)
chr7 (1-60)||(12166141-12166201)
chr7 (6-49)||(43440753-43440797)
[»] chr8 (11 HSPs)
chr8 (1-61)||(1360110-1360170)
chr8 (1-49)||(43456640-43456688)
chr8 (7-61)||(38289210-38289265)
chr8 (1-61)||(4259918-4259979)
chr8 (8-61)||(10162036-10162089)
chr8 (4-49)||(13906608-13906653)
chr8 (1-61)||(22652742-22652803)
chr8 (7-61)||(11052559-11052614)
chr8 (7-60)||(43413862-43413916)
chr8 (1-48)||(1032629-1032677)
chr8 (1-60)||(17855708-17855768)
[»] chr5 (8 HSPs)
chr5 (1-52)||(43227925-43227977)
chr5 (4-49)||(12375394-12375439)
chr5 (4-49)||(15696274-15696319)
chr5 (1-61)||(17077420-17077481)
chr5 (1-49)||(31250206-31250255)
chr5 (7-61)||(3867729-3867783)
chr5 (1-46)||(38503247-38503293)
chr5 (1-61)||(15470596-15470657)
[»] chr4 (16 HSPs)
chr4 (1-60)||(11491195-11491255)
chr4 (4-49)||(13210146-13210191)
chr4 (1-61)||(16556510-16556571)
chr4 (1-49)||(40406947-40406996)
chr4 (1-40)||(23449032-23449071)
chr4 (1-59)||(37889583-37889642)
chr4 (1-49)||(36993100-36993149)
chr4 (1-37)||(43362167-43362204)
chr4 (1-61)||(45355693-45355753)
chr4 (1-61)||(45369434-45369494)
chr4 (1-37)||(45847925-45847962)
chr4 (1-37)||(46283181-46283218)
chr4 (1-61)||(48404112-48404173)
chr4 (1-60)||(37574331-37574391)
chr4 (2-41)||(44251322-44251362)
chr4 (1-60)||(50815766-50815826)
[»] chr3 (14 HSPs)
chr3 (1-60)||(47864695-47864755)
chr3 (1-49)||(29645814-29645863)
chr3 (4-49)||(36590458-36590503)
chr3 (1-60)||(33528181-33528241)
chr3 (1-61)||(27394566-27394627)
chr3 (1-49)||(27471563-27471612)
chr3 (4-37)||(30162724-30162757)
chr3 (1-49)||(39739333-39739382)
chr3 (2-46)||(50381774-50381819)
chr3 (2-49)||(985906-985954)
chr3 (2-61)||(27817043-27817103)
chr3 (10-61)||(32421416-32421468)
chr3 (6-49)||(38668192-38668236)
chr3 (1-60)||(49429519-49429579)
[»] chr2 (5 HSPs)
chr2 (2-61)||(34107554-34107614)
chr2 (1-61)||(3330176-3330237)
chr2 (6-60)||(41541516-41541571)
chr2 (1-61)||(41750006-41750066)
chr2 (1-37)||(42678323-42678360)
[»] scaffold0018 (1 HSPs)
scaffold0018 (4-49)||(121781-121826)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 19748161 - 19748218
Alignment:
Q  4 cggacaccccacttattcattttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||    
T  19748161 cggacaccccacttattcattttaaggtgaatttctctgaccactaggctacttgaca 19748218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6228296 - 6228236
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  6228296 ccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 6228236  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 18903403 - 18903343
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  18903403 ccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 18903343  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 17217019 - 17217078
Alignment:
Q  3 ccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  17217019 ccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 17217078  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 15717040 - 15716995
Alignment:
Q  4 cggacaccccacttattcattttaaggtgaatttttctggccacta 49  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  15717040 cggacacctcacttattcattttaaggtgaatttctctagccacta 15716995  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20415598 - 20415549
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  20415598 ccccggacaccccacttattcatctttaaggtgaatttctctagccacta 20415549  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 9763502 - 9763553
Alignment:
Q  9 accccacttattcattttaaggtgaatttttctggccactaaggtacttgac 60  Q
    |||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  9763502 accccacttattcactttaaggtgaatttctctagccactatgctacttgac 9763553  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 2017719 - 2017661
Alignment:
Q  2 cccggacaccccacttattcattttaaggtgaatttttctggccactaaggtacttgac 60  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||||||||  ||||||||    
T  2017719 cccggacaccccacttgttcattttaaggtgaatttctctagccactaaactacttgac 2017661  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49239883 - 49239823
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||| ||||||||    
T  49239883 ccccggacaccccacttattcatctttaaggtaaatttctctagccactaagctacttgac 49239823  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 50065072 - 50065126
Alignment:
Q  4 cggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtactt 57  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||||| |||||    
T  50065072 cggacaccccacttattcatctttaaggtgaatttctctagccactaagctactt 50065126  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14262757 - 14262696
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||| |||||||||| |||||||||||||| ||| ||||||||| || ||||||    
T  14262757 ccccggacaccctacttattcatctttaaggtgaatttctctagccactaagctatttgaca 14262696  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24134660 - 24134611
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  24134660 ccccggacaccccacttattcatctttaaggtgaatttctctagccacta 24134611  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 49620031 - 49620091
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||| ||||| |||||||| ||| ||||||| | ||||||||    
T  49620031 ccccggacaccccacttattcatctttaaagtgaatttctctagccactaggctacttgac 49620091  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 10123083 - 10123028
Alignment:
Q  7 acaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  10123083 acaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 10123028  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 25031531 - 25031484
Alignment:
Q  3 ccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  25031531 ccggacaccccacttattcatctttaaggtgaatttctctagccacta 25031484  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 40061504 - 40061563
Alignment:
Q  3 ccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||||||||||||| ||||||||| |||| ||| ||||||| | |||||||||    
T  40061504 ccggacaccccacttattcatctttaaggtggatttctctagccactaggctacttgaca 40061563  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 47651936 - 47651991
Alignment:
Q  6 gacaccccacttattcattttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||  | |||||||||    
T  47651936 gacatcccacttattcattttaaggtgaatttctctagccactgggctacttgaca 47651991  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12148609 - 12148560
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    |||| |||||||||||||||||| |||||||||||||| ||||| |||||    
T  12148609 ccccagacaccccacttattcatctttaaggtgaatttctctggacacta 12148560  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16985971 - 16985911
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    |||||||||||  |||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  16985971 ccccggacacctaacttattcatctttaaggtgaatttctctagccactaggttacttgac 16985911  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19424105 - 19424165
Alignment:
Q  1 ccccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||  |||||||||||||| ||| ||| ||| | ||||||||    
T  19424105 ccccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctacttgac 19424165  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29332343 - 29332403
Alignment:
Q  1 ccccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||  |||||||||||||| ||| ||| ||| | ||||||||    
T  29332343 ccccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctacttgac 29332403  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29491529 - 29491565
Alignment:
Q  1 ccccggacaccccacttattcattttaaggtgaattt 37  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  29491529 ccccggacaccccacttattcactttaaagtgaattt 29491565  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 43109274 - 43109214
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||| || |||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  43109274 ccccggacacctcatttattcatctttaaggtgaatttctctagccactaggctacttgac 43109214  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 50593536 - 50593500
Alignment:
Q  13 cacttattcattttaaggtgaatttttctggccacta 49  Q
    ||||||||||||||||||||||||||| | |||||||    
T  50593536 cacttattcattttaaggtgaatttttttagccacta 50593500  T

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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 419771 - 419832
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  419771 ccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 419832  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38378278 - 38378339
Alignment:
Q  1 ccccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||||||||||||| ||||||||||||||| |||  |||||||| |||||||||    
T  38378278 ccccggacaccccacttattcatttttaaggtgaatttctctacccactaagctacttgaca 38378339  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48433746 - 48433686
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  48433746 ccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 48433686  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 4956124 - 4956068
Alignment:
Q  5 ggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  4956124 ggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 4956068  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28914913 - 28914853
Alignment:
Q  1 ccccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgac 60  Q
    |||||||||||||||||||||| ||| ||||||||||| ||| ||||||| | ||||||||    
T  28914913 ccccggacaccccacttattcactttaaaggtgaatttctctagccactaggctacttgac 28914853  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31793527 - 31793587
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||| ||||||||| |||| ||| ||||||| | ||||||||    
T  31793527 ccccggacaccccacttattcatctttaaggtggatttctctagccactaggttacttgac 31793587  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 23824627 - 23824569
Alignment:
Q  2 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttga 59  Q
    ||||||||||| |||||||||| |||||||||||||| ||| ||||||| | |||||||    
T  23824627 cccggacaccctacttattcatctttaaggtgaatttctctagccactaggttacttga 23824569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40273880 - 40273917
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaattt 37  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  40273880 ccccggacaccccacttattcatctttaaggtgaattt 40273917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 48619860 - 48619913
Alignment:
Q  6 gacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttg 58  Q
    ||||| |||||||||||| |||||||||||||| ||| ||||||||| ||||||    
T  48619860 gacactccacttattcatctttaaggtgaatttctctagccactaagctacttg 48619913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3961444 - 3961384
Alignment:
Q  1 ccccggacaccccacttattcatttt-aaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||| |||||||||||||||| ||||||||||| ||| || |||| | ||||||||    
T  3961444 ccccggacatcccacttattcattttaaaggtgaatttctctagctactaggctacttgac 3961384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12166141 - 12166201
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    |||| |||||||||||||||||| |||||||||||||| ||| || |||||  ||||||||    
T  12166141 ccccagacaccccacttattcatctttaaggtgaatttctctagctactaaactacttgac 12166201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 43440753 - 43440797
Alignment:
Q  6 gacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||    
T  43440753 gacaccccacttattcatctttaaggtgaatttctctagccacta 43440797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1360170 - 1360110
Alignment:
Q  1 ccccggacaccccacttattcattttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||||||||||||||||||| |||||||| |||  |||||| | |||||||||    
T  1360170 ccccggacaccccacttattcattttaaagtgaatttctctaaccactaggctacttgaca 1360110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43456688 - 43456640
Alignment:
Q  1 ccccggacaccccacttattcattttaaggtgaatttttctggccacta 49  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  43456688 ccccggacaccccacttattcattttaaggtgattttctctgtccacta 43456640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 38289265 - 38289210
Alignment:
Q  7 acaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||| |||||||||    
T  38289265 acaccccacttattcatctttaaggtgaatttctctagccactaagctacttgaca 38289210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4259918 - 4259979
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||| |||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  4259918 ccccggactccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 4259979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 10162036 - 10162089
Alignment:
Q  8 caccccacttattcattttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||| ||||||||||||||||||||||||| ||| ||||||| | |||||||||    
T  10162036 cacctcacttattcattttaaggtgaatttctctagccactaggttacttgaca 10162089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 13906653 - 13906608
Alignment:
Q  4 cggacaccccacttattcattttaaggtgaatttttctggccacta 49  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  13906653 cggacacctcacttattcattttaaggtgaatttctctagccacta 13906608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22652742 - 22652803
Alignment:
Q  1 ccccggacaccccacttattcattttaa-ggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||||| |||||||| |||| ||||||||| ||| ||||||||| |||||||||    
T  22652742 ccccggacaccccaattattcatgttaaaggtgaatttctctagccactaagctacttgaca 22652803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 11052614 - 11052559
Alignment:
Q  7 acaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  11052614 acaccccacttattcatctttaaggtgaatttctctagccactaggttacttgaca 11052559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 43413916 - 43413862
Alignment:
Q  7 acaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  43413916 acaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 43413862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1032629 - 1032677
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccact 48  Q
    |||| |||||||||||||||||| |||||||||||||| ||| ||||||    
T  1032629 ccccagacaccccacttattcatctttaaggtgaatttctctagccact 1032677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17855708 - 17855768
Alignment:
Q  1 ccccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||  ||||| |||||||||||| ||| ||| | ||||||||    
T  17855708 ccccggacaccccacttattcacatttaaagtgaatttttctagccgctaggttacttgac 17855768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43227925 - 43227977
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaagg 52  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  43227925 ccccggacaccccacttattcatctttaaggtgaatttctctagccactaagg 43227977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 12375439 - 12375394
Alignment:
Q  4 cggacaccccacttattcattttaaggtgaatttttctggccacta 49  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  12375439 cggacacctcacttattcattttaaggtgaatttctctagccacta 12375394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 15696274 - 15696319
Alignment:
Q  4 cggacaccccacttattcattttaaggtgaatttttctggccacta 49  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  15696274 cggacacctcacttattcattttaaggtgaatttctctagccacta 15696319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17077420 - 17077481
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||||||||||||||| || ||||||||||| ||| ||||||| | |||||||||    
T  17077420 ccccggacaccccacttattcatcttaaaggtgaatttatctagccactaggctacttgaca 17077481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31250206 - 31250255
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  31250206 ccccggacaccccacttattcatctttaaggtgaatttctctagccacta 31250255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 3867783 - 3867729
Alignment:
Q  7 acaccccacttattcattttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||||| ||||||| |||||||| || | |||||||| |||||||||    
T  3867783 acaccccacttatttattttaaagtgaatttctccgaccactaagctacttgaca 3867729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38503293 - 38503247
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggcca 46  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  38503293 ccccggacaccccacttattcatctttaaggtgaatttctctagcca 38503247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15470657 - 15470596
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||| ||||||||| |||||||| |||||||||||||| ||| ||||||||  |||||||||    
T  15470657 ccccagacaccccatttattcatctttaaggtgaatttctctagccactaaactacttgaca 15470596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11491255 - 11491195
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  11491255 ccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 11491195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 13210191 - 13210146
Alignment:
Q  4 cggacaccccacttattcattttaaggtgaatttttctggccacta 49  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  13210191 cggacacctcacttattcattttaaggtgaatttctctagccacta 13210146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 16556510 - 16556571
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||| ||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  16556510 ccccgaacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 16556571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40406996 - 40406947
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  40406996 ccccggacaccccacttattcatctttaaggtgaatttctctagccacta 40406947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23449032 - 23449071
Alignment:
Q  1 ccccggacaccccacttattcattttaaggtgaatttttc 40  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  23449032 ccccgaacaccccacttattcattttaaggtggatttttc 23449071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37889642 - 37889583
Alignment:
Q  1 ccccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttga 59  Q
    ||||||||||| |||||||||| ||||||||||||||| ||| ||||||| | |||||||    
T  37889642 ccccggacacctcacttattcacttttaaggtgaatttctctagccactaggctacttga 37889583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36993100 - 36993149
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    |||||||||||||| |||||||| |||||||||||||| ||| |||||||    
T  36993100 ccccggacaccccaattattcatctttaaggtgaatttctctagccacta 36993149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43362204 - 43362167
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaattt 37  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  43362204 ccccggacaccccacttattcatctttaaggtgaattt 43362167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 45355753 - 45355693
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||| |||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  45355753 ccccggacaccc-acttattcatctttaaggtgaatttctctagccactaggctacttgaca 45355693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 45369494 - 45369434
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||| |||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  45369494 ccccggacaccc-acttattcatctttaaggtgaatttctctagccactaggctacttgaca 45369434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45847962 - 45847925
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaattt 37  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  45847962 ccccggacaccccacttattcatctttaaggtgaattt 45847925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46283181 - 46283218
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaattt 37  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  46283181 ccccggacaccccacttattcatctttaaggtgaattt 46283218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 48404173 - 48404112
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||| ||||||||||| |||||||||||||| | | ||||||| | |||||||||    
T  48404173 ccccggacacctcacttattcatctttaaggtgaatttctttagccactaggctacttgaca 48404112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37574331 - 37574391
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    |||||| |||||||||||||||  |||||||||||||| ||| ||||||| | ||||||||    
T  37574331 ccccgggcaccccacttattcacctttaaggtgaatttctctagccactaggctacttgac 37574391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 44251362 - 44251322
Alignment:
Q  2 cccggacaccccacttattcat-tttaaggtgaatttttct 41  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  44251362 cccggacaccccatttattcatctttaaggtgaatttttct 44251322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 50815766 - 50815826
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||| ||||||| || ||||||||||| ||| ||||||| | ||||||||    
T  50815766 ccccggacaccccacatattcatcttaaaggtgaatttctctagccactaggctacttgac 50815826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47864695 - 47864755
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  47864695 ccccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 47864755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29645863 - 29645814
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  29645863 ccccggacaccccacttattcatctttaaggtgaatttctctagccacta 29645814  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 36590458 - 36590503
Alignment:
Q  4 cggacaccccacttattcattttaaggtgaatttttctggccacta 49  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  36590458 cggacacctcacttattcattttaaggtgaatttctctagccacta 36590503  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33528241 - 33528181
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgac 60  Q
    |||| |||||||||||||||||| |||||||||||||| ||| ||||||| | ||||||||    
T  33528241 ccccagacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgac 33528181  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27394566 - 27394627
Alignment:
Q  1 ccccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||||||||||||||  |||||||||||||| ||| ||| ||| | |||||||||    
T  27394566 ccccggacaccccacttattcacctttaaggtgaatttctctagccgctaggctacttgaca 27394627  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27471563 - 27471612
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| |||||||    
T  27471563 ccccggacaccccacttattcatctttaaggtaaatttctctagccacta 27471612  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 30162724 - 30162757
Alignment:
Q  4 cggacaccccacttattcattttaaggtgaattt 37  Q
    |||||||| |||||||||||||||||||||||||    
T  30162724 cggacacctcacttattcattttaaggtgaattt 30162757  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39739333 - 39739382
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    ||||||||||| ||||||||||| |||||||||||||| ||| |||||||    
T  39739333 ccccggacacctcacttattcatctttaaggtgaatttctctagccacta 39739382  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 50381774 - 50381819
Alignment:
Q  2 cccggacaccccacttattcat-tttaaggtgaatttttctggcca 46  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||    
T  50381774 cccggacaccccacttattcatctttaaggtgaatttctctagcca 50381819  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 985954 - 985906
Alignment:
Q  2 cccggacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    |||||||||||||||||||||| || ||||||||||| ||| |||||||    
T  985954 cccggacaccccacttattcatcttaaaggtgaatttctctagccacta 985906  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 27817103 - 27817043
Alignment:
Q  2 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||||| |||||||| |||||| ||||||| ||| ||||||| | |||||||||    
T  27817103 cccggacaccccatttattcatctttaagttgaatttctctagccactaggctacttgaca 27817043  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 32421416 - 32421468
Alignment:
Q  10 ccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||||| |||||| ||||||||||| ||||||||  |||||||||    
T  32421416 ccccacttattcatctttaagatgaatttttctagccactaaactacttgaca 32421468  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 38668192 - 38668236
Alignment:
Q  6 gacaccccacttattcat-tttaaggtgaatttttctggccacta 49  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||    
T  38668192 gacaccccacttattcatctttaaggtgaatttctctagccacta 38668236  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 49429519 - 49429579
Alignment:
Q  1 ccccggacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||||||||  |||||||||||||| ||| ||| ||||| || |||||    
T  49429519 ccccggacaccccacttattcacctttaaggtgaatttctctagccgctaagctatttgac 49429579  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 34107554 - 34107614
Alignment:
Q  2 cccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  34107554 cccggacaccccacttattcatctttaaggtgaatttctctagccactaggctacttgaca 34107614  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3330237 - 3330176
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    ||||||||||||||||||||||| |||||||||||||| |||  |||||||| || ||||||    
T  3330237 ccccggacaccccacttattcatctttaaggtgaatttctctaaccactaagctatttgaca 3330176  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 41541571 - 41541516
Alignment:
Q  6 gacaccccacttattca-ttttaaggtgaatttttctggccactaaggtacttgac 60  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||| | ||||||||    
T  41541571 gacaccccacttattcacttttaaggtgaatttctctggccgctaggctacttgac 41541516  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 41750006 - 41750066
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaatttttctggccactaaggtacttgaca 61  Q
    |||||||||||| |||||||||| |||||||||||||| ||| ||||||| | |||||||||    
T  41750006 ccccggacaccc-acttattcatctttaaggtgaatttctctagccactaggctacttgaca 41750066  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42678360 - 42678323
Alignment:
Q  1 ccccggacaccccacttattcat-tttaaggtgaattt 37  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42678360 ccccggacaccccacttattcatctttaaggtgaattt 42678323  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 121826 - 121781
Alignment:
Q  4 cggacaccccacttattcattttaaggtgaatttttctggccacta 49  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||    
T  121826 cggacacctcacttattcattttaaggtgaatttatctagccacta 121781  T

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