View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1166_low_79 (Length: 251)

Name: NF1166_low_79
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1166_low_79
NF1166_low_79
[»] chr4 (21 HSPs)
chr4 (1-242)||(5035159-5035400)
chr4 (1-242)||(2533850-2534091)
chr4 (9-240)||(2525300-2525531)
chr4 (52-241)||(2490716-2490905)
chr4 (43-240)||(2518812-2519009)
chr4 (141-199)||(2471733-2471791)
chr4 (140-194)||(5106632-5106686)
chr4 (134-199)||(2467212-2467277)
chr4 (141-242)||(2547221-2547322)
chr4 (142-194)||(2367981-2368033)
chr4 (135-193)||(2621482-2621540)
chr4 (137-194)||(2460279-2460336)
chr4 (143-194)||(2373547-2373598)
chr4 (52-97)||(2477156-2477201)
chr4 (143-192)||(12124524-12124573)
chr4 (143-198)||(2391333-2391388)
chr4 (137-190)||(2477256-2477309)
chr4 (145-194)||(2546825-2546874)
chr4 (141-182)||(2625589-2625630)
chr4 (141-185)||(2363162-2363206)
chr4 (141-193)||(2393911-2393963)
[»] chr8 (1 HSPs)
chr8 (142-187)||(18314718-18314763)
[»] chr5 (1 HSPs)
chr5 (142-186)||(28673354-28673398)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5035159 - 5035400
Alignment:
Q  1 acagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttgggaagcgctaagaattgatcatcacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035159 acagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttgggaagcgctaagaattgatcatcacta 5035258  T
Q  101 tctatagcacaattatggggacaaccagtatcagtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  5035259 tctatagcacaattatggggacaaccagtatcagtaaggattagttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgataa 5035358  T
Q  201 atctcatttgataacaagtgagagacgttaaacttttcatct 242  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  5035359 atctcatttgataacaagcgagagacgttaaacttttcatct 5035400  T

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Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2533850 - 2534091
Alignment:
Q  1 acagctcttgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttgggaagcgctaagaattgatcatcacta 100  Q
    |||| ||||||||||||| |||||||||||  ||| ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2533850 acagttcttgcagagatttttaattgagtgctcactgacgatattatgagttaaagcaatcctgcggagtttgggaagcgccaagaattgatcatcacta 2533949  T
Q  101 tctatagcacaattatggggacaaccagtatcagtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataa 200  Q
    ||||| ||||||||||||||||||||||  || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||     
T  2533950 tctatcgcacaattatggggacaaccagagtcggtaaggatgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatat 2534049  T
Q  201 atctcatttgataacaagtgagagacgttaaacttttcatct 242  Q
    | ||||||||||||||||||||||| |||||| |||||||||    
T  2534050 agctcatttgataacaagtgagagatgttaaatttttcatct 2534091  T

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Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 2525300 - 2525531
Alignment:
Q  9 tgcagagattcttaattgagtgtccaccgacgatattactagttaaagcaatcctgcggagtttgggaagcgctaagaattgatcatcactatctatagc 108  Q
    ||||||||||||||| |||||||  |||  ||||| ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |    
T  2525300 tgcagagattcttaactgagtgttgacccgcgatagtatgagttaaagcaatcctgcggagtttgggaagcgccaagaattgatcatcactatctatcac 2525399  T
Q  109 acaattatggggacaaccagtatcagtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatt 208  Q
    ||| |||    |||||||||| || |||||||||||||||||||||| ||||||||||||||| || ||||  |||||||||||||| |||||||||| |    
T  2525400 acagttactacgacaaccagtgtcggtaaggatgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaataaatctcagt 2525499  T
Q  209 tgataacaagtgagagacgttaaacttttcat 240  Q
    ||||||||||||||||| || ||| |||||||    
T  2525500 tgataacaagtgagagatgtcaaatttttcat 2525531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 2490716 - 2490905
Alignment:
Q  52 taaagcaatcctgcggagtttgggaagcgctaagaattgatcatcactatctatagcacaattatggggacaaccagtatcagtaaggatgagttcttcg 151  Q
    |||||||||| ||||||||||||||||| | || |||||||||||| | ||||   || |||| ||||||  |||  | || || ||||||||||| |||    
T  2490716 taaagcaatcttgcggagtttgggaagcaccaataattgatcatcattgtctagcacataattttggggattaccgttgtcggttaggatgagttcgtcg 2490815  T
Q  152 agtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaacttttcatc 241  Q
    |||||||||||||||||||| || || ||||||||||||||||||||||| |||||| |||||||||||||||| || ||| ||||||||    
T  2490816 agtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatttttcatc 2490905  T

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Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 2518812 - 2519009
Alignment:
Q  43 attactagttaaagcaatcctgcggagtttgggaagcgctaagaattgatcatcactatctatagcacaattatggggacaaccagtatcagtaaggatg 142  Q
    ||||| || |||||||||| |||||||||| |||||||| |||||||||  |||| |||||||  |  ||| || || | ||   ||||| |||||||||    
T  2518812 attacaagataaagcaatcttgcggagtttaggaagcgccaagaattgaaaatcaatatctatcaccaaatcattggtataaatggtatcggtaaggatg 2518911  T
Q  143 agttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaacttttcat 240  Q
    ||||||| ||||||||||||||||||||| || ||||||||||||||||||| |||| || |||||| ||||||||||||| | || ||| |||||||    
T  2518912 agttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcat 2519009  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 2471733 - 2471791
Alignment:
Q  141 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgata 199  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||    
T  2471733 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgata 2471791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 5106686 - 5106632
Alignment:
Q  140 atgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 194  Q
    |||||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  5106686 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 5106632  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 2467212 - 2467277
Alignment:
Q  134 gtaaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgata 199  Q
    ||||||||||| |||||||||||||||||||||||||| || ||||| ||||| ||||||| ||||    
T  2467212 gtaaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgata 2467277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 2547221 - 2547322
Alignment:
Q  141 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgataaatctcatttgataacaagtgagagacgttaaacttttcat 240  Q
    |||||||||| |||||||||||||||||||| || ||||| | |||||||||| |||||||  | ||||   ||||| |||||||||| ||| |||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcat 2547320  T
Q  241 ct 242  Q
    ||    
T  2547321 ct 2547322  T

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Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 2368033 - 2367981
Alignment:
Q  142 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 194  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 2367981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 2621540 - 2621482
Alignment:
Q  135 taaggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttg 193  Q
    ||||| ||||||||||||||||||||||||||||||| |  ||||| ||||||||||||    
T  2621540 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 2621482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 2460279 - 2460336
Alignment:
Q  137 aggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 194  Q
    |||||||||||||||||||| || ||||||||||| || |||||||||| ||||||||    
T  2460279 aggatgagttcttcgagtaatggaaaacaatcagcaattaagaagagatgattcttgt 2460336  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 2373598 - 2373547
Alignment:
Q  143 agttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 194  Q
    ||||||||||| ||||||||||||||||| || |||||||||||| ||||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaagagatcactcttgt 2373547  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 2477156 - 2477201
Alignment:
Q  52 taaagcaatcctgcggagtttgggaagcgctaagaattgatcatca 97  Q
    |||||||||| ||||||||||||||||||| || ||||||||||||    
T  2477156 taaagcaatcttgcggagtttgggaagcgccaacaattgatcatca 2477201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 12124524 - 12124573
Alignment:
Q  143 agttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattctt 192  Q
    |||||||| |||||||||||||||||||| || |||||||||||| ||||    
T  12124524 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctt 12124573  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 2391388 - 2391333
Alignment:
Q  143 agttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgttgat 198  Q
    |||||||||||||||||||| |||||| | || ||||||| ||| |||||||||||    
T  2391388 agttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgat 2391333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 2477256 - 2477309
Alignment:
Q  137 aggatgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattc 190  Q
    |||||||||||||| || ||||||||||||| ||  || |||||||||||||||    
T  2477256 aggatgagttcttctagcaaagggaaacaattagaaatgaagaagagatcattc 2477309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 2546825 - 2546874
Alignment:
Q  145 ttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttgt 194  Q
    ||||||||||||||| ||||||||||| || ||||| | |||||||||||    
T  2546825 ttcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttgt 2546874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 2625630 - 2625589
Alignment:
Q  141 tgagttcttcgagtaaagggaaacaatcagcgatcaagaaga 182  Q
    ||||||||||||||||||||||||||||| | || |||||||    
T  2625630 tgagttcttcgagtaaagggaaacaatcaacaataaagaaga 2625589  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 2363206 - 2363162
Alignment:
Q  141 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagat 185  Q
    ||||||| ||||| ||||||||||||||||| || ||||||||||    
T  2363206 tgagttcgtcgaggaaagggaaacaatcagcaatgaagaagagat 2363162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 2393963 - 2393911
Alignment:
Q  141 tgagttcttcgagtaaagggaaacaatcagcgatcaagaagagatcattcttg 193  Q
    ||||||||| ||||||||||||| ||||||| || || |||||| ||||||||    
T  2393963 tgagttcttggagtaaagggaaaaaatcagcaatgaaaaagagaccattcttg 2393911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 18314763 - 18314718
Alignment:
Q  142 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatca 187  Q
    |||||||||||| ||||||||||||||||| || | ||||||||||    
T  18314763 gagttcttcgagcaaagggaaacaatcagcaatgaggaagagatca 18314718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 28673398 - 28673354
Alignment:
Q  142 gagttcttcgagtaaagggaaacaatcagcgatcaagaagagatc 186  Q
    |||||||||||| |||||||| |||||||| || |||||||||||    
T  28673398 gagttcttcgagcaaagggaagcaatcagcaatgaagaagagatc 28673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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