View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1166_low_8 (Length: 643)
Name: NF1166_low_8
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 84 - 634
Target Start/End: Complemental strand, 38346804 - 38346255
Alignment:
| Q |
84 |
atgttttacctgctaataagctaaatgataaaaggggttccaagcacaagtagtgagcagatacatactcgttcacaaatggatgtggtaaaaaacaatc |
183 |
Q |
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| T |
38346804 |
atgttttacctgctaataagctaaatgataaa-ggggttccaagcacaagtagtgagcagatacatactcgttcacaaaaggatgtggtaaaaaacaatc |
38346706 |
T |
|
| Q |
184 |
ctaaatatttgtgacaccgactgtcatgttgacagttttgttcatattttctgttattttggttggttgctgaatctatcttggtgggatagataggatt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38346705 |
ctaaatatttgtgacaccgactgtcatgttgacagttttgttcatattttctgttattttggttggttgctgaatctatcttggtgggatagataggatt |
38346606 |
T |
|
| Q |
284 |
gttttgatatttggtctttttctgctagttctttggaatctgaaaagctttagttaaaagcttgaagtttcttggctcctaagggataatctaggcttac |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38346605 |
gttttgatatttggtctttttctgctagttctttggaatctgaaaagctttagttaaaagcttgaagtttcttggctcctaagggataatctaggcttac |
38346506 |
T |
|
| Q |
384 |
ctttccttagagtttctcatgtgta--ctctgtttgtatacggttcaggcattctctcgacttttattgctttattgtgcctttatnnnnnnntaaccct |
481 |
Q |
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| T |
38346505 |
ctttccttagagtttctcatgtgtactctctgtttgtatacagttcaggcattctctcgacttttattgctttattgtgcctttataaaaaaaaaa--ct |
38346408 |
T |
|
| Q |
482 |
gatattttacctttattacttgcaatgattcagtaaacttgccgagacgctatagaccactgctatcgtgttcctcttctcctctacaaaactcatttgg |
581 |
Q |
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| T |
38346407 |
gatattttacctttattacttgcaatgattcagtaaacttgccaagacgctatagaccactgctatcgtgttcctcttctcctctacaaaactcatttgg |
38346308 |
T |
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| Q |
582 |
ttaatccttagacaaagaagtagaaacttttagactgccaccttctttcatct |
634 |
Q |
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| T |
38346307 |
ttaatccttagacaaagaagtagaaacttttagactgccaccttctttcatct |
38346255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 18438706 - 18438751
Alignment:
| Q |
232 |
ttctgttattttggttggttgctgaatctatcttggtgggatagat |
277 |
Q |
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| T |
18438706 |
ttctgttattttagatggttgctgaatctatcttagtgggatagat |
18438751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 18449564 - 18449609
Alignment:
| Q |
232 |
ttctgttattttggttggttgctgaatctatcttggtgggatagat |
277 |
Q |
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| T |
18449564 |
ttctgttattttagatggttgctgaatctatcttagtgggatagat |
18449609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 18454657 - 18454702
Alignment:
| Q |
232 |
ttctgttattttggttggttgctgaatctatcttggtgggatagat |
277 |
Q |
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| T |
18454657 |
ttctgttattttagatggttgctgaatctatcttagtgggatagat |
18454702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 8455537 - 8455476
Alignment:
| Q |
241 |
tttggttggttgctgaatctatcttggtgggatagataggattgttttgatatttggtcttt |
302 |
Q |
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| T |
8455537 |
tttggatggttgataattctatcttagtgggatagatttgtttgttttgatatttggtcttt |
8455476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 30559305 - 30559228
Alignment:
| Q |
232 |
ttctgttattttggttggttgctgaatctatct---tggtgggatagataggattgttttgatatttggtctttttct |
306 |
Q |
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|||||||||||||| |||||||||||||||||| | || ||||||| |||||| | ||||||||| | |||||||| |
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| T |
30559305 |
ttctgttattttgggtggttgctgaatctatcttagtagttggatagagaggattctgttgatattttgactttttct |
30559228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 6982834 - 6982906
Alignment:
| Q |
125 |
aagcacaagtagtgagcagatacatactcgttcacaaatggatgtggtaaaaaacaatcctaaatatttgtga |
197 |
Q |
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| T |
6982834 |
aagcataagtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatcttaaatatttgtga |
6982906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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