View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1166_low_87 (Length: 216)
Name: NF1166_low_87
Description: NF1166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1166_low_87 |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 30652607 - 30652392
Alignment:
| Q |
1 |
tctgggatgatgccgtggagtatgtacttggaagaaccgattggttttcacccctttgtgatgttgttataggtgagacaattggattacatacgacact |
100 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30652607 |
tctgggatgatgtcggggagtatgtacttggaagaaccgattggttttcacccctttgtgatgttgttataggtgagataattggattacatacgacact |
30652508 |
T |
|
| Q |
101 |
tcaatgggtatatgatctacaatttgattttgttgattttgtattagattcacaacatgttgtagattcttttcatataggcgtagatgatcatagtgaa |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30652507 |
tcaatgggtatatgatctacaatttgatattgttgattttgtattagattcacaacaggttgtagattcttttcatacaggcgtagatgatcatagtgag |
30652408 |
T |
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| Q |
201 |
tttggttgtattatta |
216 |
Q |
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|||||||||||||||| |
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| T |
30652407 |
tttggttgtattatta |
30652392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 216
Target Start/End: Original strand, 5808027 - 5808163
Alignment:
| Q |
80 |
aattggattacatacgacacttcaatgggtatatgatctacaatttgattttgttgattttgtattagattcacaacatgttgtagattcttttcatata |
179 |
Q |
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||||||||||||||||||| ||||||| ||| ||||||| |||||||| |||||||||||||||||| ||| || ||||| ||||||||||||| | |
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| T |
5808027 |
aattggattacatacgacatttcaatgaatatttgatctataatttgataatgttgattttgtattagaatcaaaatgtgttgcagattcttttcatgca |
5808126 |
T |
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| Q |
180 |
ggcgtagatgatcatagtgaatttggttgtattatta |
216 |
Q |
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| | |||||||||||||||| |||||||||||||||| |
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| T |
5808127 |
gccatagatgatcatagtgagtttggttgtattatta |
5808163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 51080904 - 51080808
Alignment:
| Q |
120 |
caatttgattttgttgattttgtattagattcacaacatgttgtagattcttttcatataggcgtagatgatcatagtgaatttggttgtattatta |
216 |
Q |
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||||||||| |||||||||||| |||||||| | || || |||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||| |
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| T |
51080904 |
caatttgataatgttgattttgtcctagattcaaagcaggtcgtagattcttttcatacaggagtagatgatgatagtgaacttggttgtattatta |
51080808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 14857205 - 14857058
Alignment:
| Q |
69 |
ataggtgagacaattggattacatacgacacttcaatgggtatatgatctacaatttgattttgttgattttgtattagattcacaacatgttgtagatt |
168 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| || |||||||||||||||| |||| |||||||| |||| |||||||| |||||||||| |
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| T |
14857205 |
ataggtgaggcagttggattacatacgacacttcaatgggcatctgatctacaatttgataatgttaattttgtagtagactcacaacaggttgtagatt |
14857106 |
T |
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| Q |
169 |
cttttcatataggcgtagatgatcatagtgaatttggttgtattatta |
216 |
Q |
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| T |
14857105 |
cttttcatgcagacatatatgatcatagtgaatttgattgtattatta |
14857058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 14857314 - 14857214
Alignment:
| Q |
6 |
gatgatgccgtggagtatgtacttggaagaaccgattggttttcacccctttgtgatgttgttataggtgagacaattggattacatacgacacttcaat |
105 |
Q |
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|||||||||| |||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |
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| T |
14857314 |
gatgatgccggagagtatgttcttgcaagaatcgattggttttatcccctttgtgatgttgttataggtgaggcagttggattacatacggcacttcaat |
14857215 |
T |
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| Q |
106 |
g |
106 |
Q |
| |
|
| |
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| T |
14857214 |
g |
14857214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 27527192 - 27527331
Alignment:
| Q |
77 |
gacaattggattacatacgacacttcaatgggtatatgatctacaatttgattttgttgattttgtattagattcacaacatgttgtagattcttttcat |
176 |
Q |
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|||| |||||||| |||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27527192 |
gacagttggattatatacgacacttcaacgaatatctgatctacaatttgataatgttgattttgtattagattcacaacaggttgtagattcttttcat |
27527291 |
T |
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| Q |
177 |
ataggcgtagatgatcatagtgaatttggttgtattatta |
216 |
Q |
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| | || ||||||||||||||| ||||| ||||||||| |
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| T |
27527292 |
acaagcaaagatgatcatagtgagtttggcagtattatta |
27527331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 37796403 - 37796580
Alignment:
| Q |
39 |
gattggttttcacccctttgtgatgttgttataggtgagacaattggattacatacgacacttcaatgggtatatgatctacaatttgattttgttgatt |
138 |
Q |
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||||||||||| || || ||||| ||| | ||||| || ||||||| ||||| ||| | || || ||| ||| || || ||||||||| |||||||| |
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| T |
37796403 |
gattggttttctcctctatgtgaagttatgataggagaagcaattgggttacacacggcgctgcagtggatatcagacctccaatttgataatgttgatt |
37796502 |
T |
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| Q |
139 |
ttgtattagattcacaacatgttgtagattcttttcatataggcgtagatgatcatagtgaatttggttgtattatta |
216 |
Q |
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|||| |||||||| | || | |||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||||| |
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| T |
37796503 |
ttgtcctagattcaaagcagatcgtagattcttttcatacaggagtagatgatgatagcgaacttggttgtattatta |
37796580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 216
Target Start/End: Original strand, 27265590 - 27265773
Alignment:
| Q |
33 |
agaaccgattggttttcacccctttgtgatgttgttataggtgagacaattggattacatacgacacttcaatgggtatatgatctacaatttgattttg |
132 |
Q |
| |
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||||| ||||||||||| || || |||||||| | ||||| || || |||| ||||| ||| |||| ||||||| | || |||||||||||| || |
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| T |
27265590 |
agaactgattggttttctcctctatgtgatgtcataataggggaagcagttggcttacacacggcactataatgggtttcagacctacaatttgataatg |
27265689 |
T |
|
| Q |
133 |
ttgattttgtattagattcacaacatgttgtagattcttttcatataggcgtagatgatcatagtgaatttggttgtattatta |
216 |
Q |
| |
|
| || |||||||||||||||||| | || || ||||| |||||| ||| ||||||||| ||| ||| ||||||||||||||| |
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| T |
27265690 |
tagactttgtattagattcacaaaaggtcgtggattcctttcatgcaggggtagatgatgataatgagcttggttgtattatta |
27265773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 38998786 - 38998882
Alignment:
| Q |
120 |
caatttgattttgttgattttgtattagattcacaacatgttgtagattcttttcatataggcgtagatgatcatagtgaatttggttgtattatta |
216 |
Q |
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||||||||| ||||||||||| |||||||| | || | |||||||||||||||| ||| ||||||||| ||| ||| ||||||||||||||| |
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| T |
38998786 |
caatttgataatgttgattttgccctagattcaaagcaggacgtagattcttttcatacaggagtagatgatgataacgaacttggttgtattatta |
38998882 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 8321445 - 8321282
Alignment:
| Q |
59 |
tgatgttgttataggtgagacaattggattacatacgacacttcaatgggtatatgatctacaatttg---attttgttgat----tttgtattagattc |
151 |
Q |
| |
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|||||||| |||||||||| | |||||||| ||| ||||||||||||||||| | |||||||||||| || |||||||| ||||||| |||||| |
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| T |
8321445 |
tgatgttgctataggtgaggtagttggattatatatgacacttcaatgggtatctaatctacaatttgataatattgttgattttgtttgtataagattc |
8321346 |
T |
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| Q |
152 |
acaacatgttgtagattcttttcatataggcgtagatgatcatagtgaatttggttgtattatta |
216 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||| |
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| T |
8321345 |
acaaca-gttgtagattcttttcatacaggtgtagatgatcaaagtgagtttggttgtattatta |
8321282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 40287249 - 40287153
Alignment:
| Q |
120 |
caatttgattttgttgattttgtattagattcacaacatgttgtagattcttttcatataggcgtagatgatcatagtgaatttggttgtattatta |
216 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | || || ||| |||||||||||| || ||||||||| |||| ||| ||||||||||||||| |
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| T |
40287249 |
caatttgataatgttgattttgtcctagattcaaagcaggtcgtaaattcttttcatacagaagtagatgatgatagcgaacttggttgtattatta |
40287153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 8079587 - 8079433
Alignment:
| Q |
57 |
tgtgatgttgttataggtgagacaattggattacatacgacacttcaatgggtatatgatctacaatttgattttgttgattttgtattagattcacaac |
156 |
Q |
| |
|
||||||||||| ||||| || || |||| |||||||||| ||| |||||| || ||||| ||||||||| ||| || || || |||||||| || | |
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|
| T |
8079587 |
tgtgatgttgtaataggcgaagcagttgggttacatacgatactgcaatggataacagatcttcaatttgataatgtagacttcgtgttagattctcagc |
8079488 |
T |
|
| Q |
157 |
atgttgtagattcttttcatataggcgtagatgatcatagtgaatttggttgtat |
211 |
Q |
| |
|
| ||||| || ||||||||| | | ||||||||| |||||||| |||||||||| |
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|
| T |
8079487 |
aggttgtggactcttttcatccatgtgtagatgataatagtgaacttggttgtat |
8079433 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 19046933 - 19047023
Alignment:
| Q |
87 |
ttacatacgacacttcaatgggtatatgatctacaatttgattttgttgattttgtattagattcacaacatgttgtagattcttttcata |
177 |
Q |
| |
|
||||| ||||||| | ||||||| | ||||| ||||||||| ||| || ||||| |||||||||||||| || || ||||||||||||| |
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| T |
19046933 |
ttacacacgacacattaatgggtttcagatctccaatttgataatgtagactttgttttagattcacaacaagtcgttgattcttttcata |
19047023 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 16055585 - 16055528
Alignment:
| Q |
41 |
ttggttttcacccctttgtgatgttgttataggtgagacaattggattacatacgaca |
98 |
Q |
| |
|
||||||||| || ||||||||||||| || ||||||||||||| |||||||||||| |
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|
| T |
16055585 |
ttggttttctcctctttgtgatgttgcaatcagtgagacaattggcttacatacgaca |
16055528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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