View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11670_low_1 (Length: 455)
Name: NF11670_low_1
Description: NF11670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11670_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 29662510 - 29662072
Alignment:
| Q |
1 |
tgtgccacacgtcaaattcacaaccgtgctataatctcattcatctattgagaaatactcataaatattcaagacaagataatacacttgtggatacctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662510 |
tgtgccacacgtcaaattcacaaccgtgctataatc--attcctctattgagaaatactcataaatattcaagacaagataatacacttgtggatacctc |
29662413 |
T |
|
| Q |
101 |
gtaccataatttgctcctcaattaccatatcatcatacaaactcaatccaactcctcacatttactacacaaaaatagccacaaaacaaatatatatatc |
200 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662412 |
gtgccataatttgctcctcaattcccatatcatcatacaaactcaatccaactcctcacatttactacacaaaaatagccacaaaacaaatatatatatc |
29662313 |
T |
|
| Q |
201 |
atcaataacactaggcaaagagaatttatattatattttag-tttctagttgatataatttttcaaattaagctaggagaattaatggcttctatcacca |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662312 |
atcaataacactaggcaaagagaatttatattatattttagttttctagttgatataatttttcaaattaagctaggagaattaatggcttctatcacca |
29662213 |
T |
|
| Q |
300 |
tgttgccaatggttccaacaacaggaagagtctttgcagctacaggtgcaaagggtactacaggtggtggcagtagcaagcaagagaaaggtttttggga |
399 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662212 |
tgttgccaatggttccaacaacgggaagagtctttgcagctacaggtgcaaagggtactacaggtggtggcagtagcaagcaagagaaaggtttttggga |
29662113 |
T |
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| Q |
400 |
ttggattgttggtggtttaacaaaagaagatcagttctatg |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
29662112 |
ttggattgttggtggtttaacaaaagaagatcagttctatg |
29662072 |
T |
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