View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11670_low_2 (Length: 372)
Name: NF11670_low_2
Description: NF11670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11670_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 43234546 - 43234775
Alignment:
| Q |
1 |
ttcaaaatcaacatatatataatcccaaacccatttaggagacaccagtgggggtttgtacatgttttgccaattgaaatatatatctttttaagaacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43234546 |
ttcaaaatcaacatatatataatcccaaacccatttaggagacaccggtaggggtttgtacatgttttgccaattgaaatatctatctttttaagaacta |
43234645 |
T |
|
| Q |
101 |
nnnnnnnnaaggactaaatttggtatgaagatttaagaaaactaaatacatatttaaccttagctaggtaaatgctatcatgtgttctaagagcatacga |
200 |
Q |
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| T |
43234646 |
ttttttttaaggactaaatttggtatgaagatttaagaaaattaaatacatatttaaccttagctaggtaaatgctatcatgtgttctaagagcatacga |
43234745 |
T |
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| Q |
201 |
taataaactaacgggtcttgttaacgagtg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43234746 |
taataaactaacgggtcttgttaacgagtg |
43234775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 43234914 - 43235044
Alignment:
| Q |
240 |
cactcgttaacatttccctaaactaaatatagaaatactatcttgaaaattatggggtatatagtcnnnnnnnnnnnngagtgtgtgaagcgttgcctta |
339 |
Q |
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| T |
43234914 |
cactcgttaacatttccctaaactaaatatagaaatactatcttgaaaattatggggcatatagtctttttgatctttgagtgtgtgaagcgttgccgta |
43235013 |
T |
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| Q |
340 |
atagcatctgaatgcatcgaaattgcaagta |
370 |
Q |
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| T |
43235014 |
atagcatctgaatgcatcgaaattgcaagta |
43235044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 30509284 - 30509320
Alignment:
| Q |
213 |
gggtcttgttaacgagtgtttccggaacactcgttaa |
249 |
Q |
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| T |
30509284 |
gggtcttgttaacgagtgtctccggaacactctttaa |
30509320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 41370306 - 41370270
Alignment:
| Q |
213 |
gggtcttgttaacgagtgtttccggaacactcgttaa |
249 |
Q |
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| T |
41370306 |
gggtcttgttaacgagtgtttccggagcactcattaa |
41370270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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