View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11670_low_5 (Length: 229)

Name: NF11670_low_5
Description: NF11670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11670_low_5
NF11670_low_5
[»] chr4 (3 HSPs)
chr4 (7-229)||(34136313-34136535)
chr4 (8-229)||(34139265-34139486)
chr4 (7-229)||(34141945-34142167)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 34136535 - 34136313
Alignment:
Q  7 tatgagagtgtggagcatagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34136535 tatgagagtgtggagcatagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctt 34136436  T
Q  107 tggaggagcttacaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaaga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34136435 tggaggagcttacaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaaga 34136336  T
Q  207 tgaggagaatcttcaaatttatc 229  Q
    |||||||||||||||||||||||    
T  34136335 tgaggagaatcttcaaatttatc 34136313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 34139486 - 34139265
Alignment:
Q  8 atgagagtgtggagcatagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagccttt 107  Q
    |||||||||||||||| |||| | ||||||||||||||||||| || ||||||||||||||||| ||||| |||||| |||||  |||||||||||||||    
T  34139486 atgagagtgtggagcacagagcattggtgaacaaggagaaagaaagattttctattccattctttttcaacccaggatatgatattgaaatcaagccttt 34139387  T
Q  108 ggaggagcttacaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaagat 207  Q
    |||||||||||  ||  |||||||| || ||||||||||||| |||||||||||||| |||| |||||| |||  | ||||||| ||||||||||||||     
T  34139386 ggaggagcttattaacgagcaaaacccttcaaaatataagccttataaatggggtaaattttatgtccatagaacaaacagtaacttcaagaaacaagaa 34139287  T
Q  208 gaggagaatcttcaaatttatc 229  Q
    ||||||||||||||||||||||    
T  34139286 gaggagaatcttcaaatttatc 34139265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 34142167 - 34141945
Alignment:
Q  7 tatgagagtgtggagcatagagtaatggtgaacaaggagaaagagaggttttctattccattcttcttcaatccaggacatgatgctgaaatcaagcctt 106  Q
    ||||||||||||||||| ||||  || |||| ||  ||||| || |||||||||||||| ||||| ||    |||||| |||| |||||| |||| ||||    
T  34142167 tatgagagtgtggagcacagagcgattgtgagcacagagaaggaaaggttttctattcccttctttttattcccaggatatgacgctgaagtcaaacctt 34142068  T
Q  107 tggaggagcttacaaataagcaaaactctccaaaatataagccatataaatggggtaagttttttgtccacagattacacagtaatttcaagaaacaaga 206  Q
    | || ||||||| |||| |||||||| || ||||||||| ||||||||||||||| |||||| |||| ||||||  | |||| ||| |||||||||||||    
T  34142067 ttgaagagcttataaatgagcaaaacccttcaaaatataggccatataaatggggaaagtttcttgttcacagaaaagacagcaatatcaagaaacaaga 34141968  T
Q  207 tgaggagaatcttcaaatttatc 229  Q
    || ||||||||||||||||||||    
T  34141967 tgtggagaatcttcaaatttatc 34141945  T

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